Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TJ8 entry

There are 2 chains in PDB entry 7TJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 107LYS 1504
B
 VAL 25LYS 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 7TJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 116Right-handed alpha
Helix 2
AA2
A
117 137Right-handed alpha
Helix 3
AA3
A
143 166Right-handed alpha
Helix 4
AA4
A
179 196Right-handed alpha
Helix 5
AA5
A
201 209Right-handed alpha
Helix 6
AA6
A
210 217Right-handed 310
Helix 7
AA7
A
220 234Right-handed alpha
Helix 8
AA8
A
237 260Right-handed alpha
Helix 9
AA9
A
261 263Right-handed 310
Helix 10
AB1
A
285 289Right-handed 310
Helix 11
AB2
A
329 333Right-handed 310
Helix 12
AB3
A
340 351Right-handed alpha
Helix 13
AB4
A
355 366Right-handed alpha
Helix 14
AB5
A
367 369Right-handed 310
Helix 15
AB6
A
370 382Right-handed alpha
Helix 16
AB7
A
383 403Right-handed alpha
Helix 17
AB8
A
508 524Right-handed alpha
Helix 18
AB9
A
530 556Right-handed alpha
Helix 19
AC1
A
563 567Right-handed 310
Helix 20
AC2
A
569 583Right-handed alpha
Helix 21
AC3
A
592 609Right-handed 310
Helix 22
AC4
A
610 656Right-handed alpha
Helix 23
AC5
A
656 661Right-handed alpha
Helix 24
AC6
A
673 687Right-handed alpha
Helix 25
AC7
A
688 701Right-handed alpha
Helix 26
AC8
A
701 733Right-handed alpha
Helix 27
AC9
A
922 931Right-handed alpha
Helix 28
AD1
A
933 950Right-handed alpha
Helix 29
AD2
A
951 954Right-handed 310
Helix 30
AD3
A
955 960Right-handed 310
Helix 31
AD4
A
961 990Right-handed alpha
Helix 32
AD5
A
991 998Right-handed alpha
Helix 33
AD6
A
998 1018Right-handed alpha
Helix 34
AD7
A
1019 1033Right-handed 310
Helix 35
AD8
A
1034 1041Right-handed alpha
Helix 36
AD9
A
1041 1056Right-handed alpha
Helix 37
AE1
A
1058 1081Right-handed alpha
Helix 38
AE2
A
1103 1108Right-handed alpha
Helix 39
AE3
A
1127 1140Right-handed alpha
Helix 40
AE4
A
1143 1154Right-handed alpha
Helix 41
AE5
A
1166 1168Right-handed 310
Helix 42
AE6
A
1169 1180Right-handed alpha
Helix 43
AE7
A
1181 1204Right-handed alpha
Helix 44
AE8
A
1213 1222Right-handed alpha
Helix 45
AE9
A
1244 1249Right-handed alpha
Helix 46
AF1
A
1250 1270Right-handed alpha
Helix 47
AF2
A
1276 1302Right-handed alpha
Helix 48
AF3
A
1312 1330Right-handed alpha
Helix 49
AF4
A
1343 1351Right-handed alpha
Helix 50
AF5
A
1352 1362Right-handed 310
Helix 51
AF6
A
1363 1402Right-handed alpha
Helix 52
AF7
A
1419 1432Right-handed alpha
Helix 53
AF8
A
1436 1444Right-handed alpha
Helix 54
AF9
A
1445 1449Right-handed 310
Helix 55
AG1
A
1468 1502Right-handed alpha
Helix 56
AG2
B
153 186Right-handed alpha
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There are 5 sheets in PDB entry 7TJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
320 324anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1086 1088first strand
Strand 2
A
1117 1119anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
140 146parallel
Strand 3
B
115 120anti-parallel
Strand 4
B
62 63anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
105 107anti-parallel
Strand 3
B
92 94anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
134 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il