Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TJD entry

There are 20 chains in PDB entry 7TJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TYR 132
B
 ALA 1TYR 132
C
 ALA 1TYR 132
D
 ALA 1TYR 132
E
 ALA 1TYR 132
F
 ALA 1TYR 132
G
 ALA 1TYR 132
H
 ALA 1TYR 132
I
 ALA 1TYR 132
J
 ALA 1TYR 132
K
 ALA 1TYR 132
L
 ALA 1TYR 132
M
 ALA 1TYR 132
N
 ALA 1TYR 132
O
 ALA 1TYR 132
P
 ALA 1TYR 132
Q
 ALA 1TYR 132
R
 ALA 1TYR 132
S
 ALA 1TYR 132
T
 ALA 1TYR 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 7TJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed 310
Helix 2
AA2
A
101 118Right-handed alpha
Helix 3
AA3
A
118 126Right-handed alpha
Helix 4
AA4
B
41 45Right-handed 310
Helix 5
AA5
B
101 118Right-handed alpha
Helix 6
AA6
B
118 126Right-handed alpha
Helix 7
AA7
C
41 45Right-handed 310
Helix 8
AA8
C
101 118Right-handed alpha
Helix 9
AA9
C
118 126Right-handed alpha
Helix 10
AB1
D
41 45Right-handed 310
Helix 11
AB2
D
101 118Right-handed alpha
Helix 12
AB3
D
118 126Right-handed alpha
Helix 13
AB4
E
41 45Right-handed 310
Helix 14
AB5
E
101 118Right-handed alpha
Helix 15
AB6
E
118 126Right-handed alpha
Helix 16
AB7
F
41 45Right-handed 310
Helix 17
AB8
F
101 118Right-handed alpha
Helix 18
AB9
F
118 126Right-handed alpha
Helix 19
AC1
G
41 45Right-handed 310
Helix 20
AC2
G
101 118Right-handed alpha
Helix 21
AC3
G
118 126Right-handed alpha
Helix 22
AC4
H
41 45Right-handed 310
Helix 23
AC5
H
101 118Right-handed alpha
Helix 24
AC6
H
118 126Right-handed alpha
Helix 25
AC7
I
41 45Right-handed 310
Helix 26
AC8
I
101 117Right-handed alpha
Helix 27
AC9
I
118 126Right-handed alpha
Helix 28
AD1
J
41 45Right-handed 310
Helix 29
AD2
J
101 118Right-handed alpha
Helix 30
AD3
J
118 126Right-handed alpha
Helix 31
AD4
K
41 45Right-handed 310
Helix 32
AD5
K
101 118Right-handed alpha
Helix 33
AD6
K
118 126Right-handed alpha
Helix 34
AD7
L
41 45Right-handed 310
Helix 35
AD8
L
101 118Right-handed alpha
Helix 36
AD9
L
118 126Right-handed alpha
Helix 37
AE1
M
41 45Right-handed 310
Helix 38
AE2
M
101 118Right-handed alpha
Helix 39
AE3
M
118 126Right-handed alpha
Helix 40
AE4
N
41 45Right-handed 310
Helix 41
AE5
N
101 118Right-handed alpha
Helix 42
AE6
N
118 126Right-handed alpha
Helix 43
AE7
O
41 45Right-handed 310
Helix 44
AE8
O
101 118Right-handed alpha
Helix 45
AE9
O
118 126Right-handed alpha
Helix 46
AF1
P
41 45Right-handed 310
Helix 47
AF2
P
101 118Right-handed alpha
Helix 48
AF3
P
118 126Right-handed alpha
Helix 49
AF4
Q
41 45Right-handed 310
Helix 50
AF5
Q
101 118Right-handed alpha
Helix 51
AF6
Q
118 126Right-handed alpha
Helix 52
AF7
R
41 45Right-handed 310
Helix 53
AF8
R
101 117Right-handed alpha
Helix 54
AF9
R
118 126Right-handed alpha
Helix 55
AG1
S
41 45Right-handed 310
Helix 56
AG2
S
101 118Right-handed alpha
Helix 57
AG3
S
118 126Right-handed alpha
Helix 58
AG4
T
41 45Right-handed 310
Helix 59
AG5
T
101 118Right-handed alpha
Helix 60
AG6
T
118 126Right-handed alpha
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There are 31 sheets in PDB entry 7TJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
17 21anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
62 74anti-parallel
Strand 4
A
83 96anti-parallel
Strand 5
B
83 96anti-parallel
Strand 6
B
62 74anti-parallel
Strand 7
B
47 51anti-parallel
Strand 8
B
35 36anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
19 21anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
17 21anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
62 74anti-parallel
Strand 4
C
83 96anti-parallel
Strand 5
D
83 96anti-parallel
Strand 6
D
62 74anti-parallel
Strand 7
D
47 53anti-parallel
Strand 8
D
33 36anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
D
18 21anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 11first strand
Strand 2
E
17 21anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 36first strand
Strand 2
E
47 53anti-parallel
Strand 3
E
62 74anti-parallel
Strand 4
E
83 96anti-parallel
Strand 5
F
83 96anti-parallel
Strand 6
F
62 74anti-parallel
Strand 7
F
47 53anti-parallel
Strand 8
F
35 36anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 9first strand
Strand 2
F
18 21anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 11first strand
Strand 2
G
17 21anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
33 36first strand
Strand 2
G
47 53anti-parallel
Strand 3
G
62 74anti-parallel
Strand 4
G
83 96anti-parallel
Strand 5
H
83 96anti-parallel
Strand 6
H
62 74anti-parallel
Strand 7
H
47 53anti-parallel
Strand 8
H
35 36anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 8first strand
Strand 2
H
19 21anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 11first strand
Strand 2
I
17 21anti-parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
35 36first strand
Strand 2
I
47 53anti-parallel
Strand 3
I
62 74anti-parallel
Strand 4
I
83 96anti-parallel
Strand 5
J
83 96anti-parallel
Strand 6
J
62 74anti-parallel
Strand 7
J
47 53anti-parallel
Strand 8
J
35 36anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
6 8first strand
Strand 2
J
19 21anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
6 11first strand
Strand 2
K
17 21anti-parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
33 36first strand
Strand 2
K
47 51anti-parallel
Strand 3
K
62 74anti-parallel
Strand 4
K
83 96anti-parallel
Strand 5
L
83 96anti-parallel
Strand 6
L
62 74anti-parallel
Strand 7
L
47 53anti-parallel
Strand 8
L
33 36anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 8first strand
Strand 2
L
19 21anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
6 8first strand
Strand 2
M
19 21anti-parallel
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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
33 36first strand
Strand 2
M
47 53anti-parallel
Strand 3
M
62 74anti-parallel
Strand 4
M
83 96anti-parallel
Strand 5
N
83 96anti-parallel
Strand 6
N
62 74anti-parallel
Strand 7
N
47 51anti-parallel
Strand 8
N
35 36anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
6 9first strand
Strand 2
N
18 21anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
6 8first strand
Strand 2
O
19 21anti-parallel
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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
33 36first strand
Strand 2
O
47 51anti-parallel
Strand 3
O
62 74anti-parallel
Strand 4
O
83 96anti-parallel
Strand 5
R
83 96anti-parallel
Strand 6
R
62 74anti-parallel
Strand 7
R
47 53anti-parallel
Strand 8
R
33 36anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
6 11first strand
Strand 2
P
17 21anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
33 36first strand
Strand 2
P
47 53anti-parallel
Strand 3
P
62 74anti-parallel
Strand 4
P
83 96anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
6 11first strand
Strand 2
Q
17 21anti-parallel
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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
33 36first strand
Strand 2
Q
47 53anti-parallel
Strand 3
Q
62 74anti-parallel
Strand 4
Q
83 96anti-parallel
Strand 5
S
83 97anti-parallel
Strand 6
S
61 74anti-parallel
Strand 7
S
47 53anti-parallel
Strand 8
S
33 36anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
6 11first strand
Strand 2
R
17 21anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
6 9first strand
Strand 2
S
18 21anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
6 9first strand
Strand 2
T
18 21anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
35 36first strand
Strand 2
T
47 53anti-parallel
Strand 3
T
62 74anti-parallel
Strand 4
T
83 96anti-parallel
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