Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TJF entry

There are 8 chains in PDB entry 7TJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 356	LEU 914
B	THR 233	LYS 497
C	ALA 16	ILE 616
D	ASP 46	LEU 529
E	ASN 2	HIS 478
F	SER 271	ALA 430
G	T 21	A 61
H	T 24	A 64

There are128 helices in PDB entry 7TJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	374	378	Right-handed 310
Helix 2	AA2	A	381	385	Right-handed 310
Helix 3	AA3	A	393	397	Right-handed 310
Helix 4	AA4	A	407	411	Right-handed 310
Helix 5	AA5	A	421	430	Right-handed alpha
Helix 6	AA6	A	452	469	Right-handed alpha
Helix 7	AA7	A	484	502	Right-handed alpha
Helix 8	AA8	A	522	534	Right-handed alpha
Helix 9	AA9	A	538	553	Right-handed alpha
Helix 10	AB1	A	554	558	Right-handed 310
Helix 11	AB2	A	568	571	Right-handed 310
Helix 12	AB3	A	576	586	Right-handed alpha
Helix 13	AB4	A	603	609	Right-handed alpha
Helix 14	AB5	A	610	618	Right-handed alpha
Helix 15	AB6	A	628	640	Right-handed alpha
Helix 16	AB7	A	685	700	Right-handed alpha
Helix 17	AB8	A	702	726	Right-handed alpha
Helix 18	AB9	A	774	787	Right-handed alpha
Helix 19	AC1	A	789	796	Right-handed alpha
Helix 20	AC2	A	798	815	Right-handed alpha
Helix 21	AC3	A	822	836	Right-handed alpha
Helix 22	AC4	A	839	852	Right-handed alpha
Helix 23	AC5	A	865	876	Right-handed alpha
Helix 24	AC6	A	897	908	Right-handed alpha
Helix 25	AC7	A	910	914	Right-handed 310
Helix 26	AC8	B	241	250	Right-handed alpha
Helix 27	AC9	B	262	266	Right-handed 310
Helix 28	AD1	B	270	285	Right-handed alpha
Helix 29	AD2	B	286	298	Right-handed alpha
Helix 30	AD3	B	300	310	Right-handed alpha
Helix 31	AD4	B	322	331	Right-handed alpha
Helix 32	AD5	B	333	342	Right-handed alpha
Helix 33	AD6	B	371	384	Right-handed alpha
Helix 34	AD7	B	398	412	Right-handed alpha
Helix 35	AD8	B	434	447	Right-handed alpha
Helix 36	AD9	B	460	465	Right-handed 310
Helix 37	AE1	B	466	474	Right-handed alpha
Helix 38	AE2	B	488	493	Right-handed 310
Helix 39	AE3	C	16	20	Right-handed 310
Helix 40	AE4	C	50	92	Right-handed alpha
Helix 41	AE5	C	138	157	Right-handed alpha
Helix 42	AE6	C	185	190	Right-handed alpha
Helix 43	AE7	C	190	195	Right-handed alpha
Helix 44	AE8	C	212	224	Right-handed alpha
Helix 45	AE9	C	225	229	Right-handed 310
Helix 46	AF1	C	243	249	Right-handed alpha
Helix 47	AF2	C	252	260	Right-handed alpha
Helix 48	AF3	C	271	273	Right-handed 310
Helix 49	AF4	C	274	289	Right-handed alpha
Helix 50	AF5	C	295	308	Right-handed alpha
Helix 51	AF6	C	313	332	Right-handed alpha
Helix 52	AF7	C	333	343	Right-handed 310
Helix 53	AF8	C	347	355	Right-handed alpha
Helix 54	AF9	C	357	371	Right-handed alpha
Helix 55	AG1	C	374	381	Right-handed alpha
Helix 56	AG2	C	389	394	Right-handed alpha
Helix 57	AG3	C	401	416	Right-handed alpha
Helix 58	AG4	C	423	434	Right-handed alpha
Helix 59	AG5	C	436	441	Right-handed alpha
Helix 60	AG6	C	473	480	Right-handed alpha
Helix 61	AG7	C	482	493	Right-handed alpha
Helix 62	AG8	C	511	517	Right-handed alpha
Helix 63	AG9	C	519	530	Right-handed alpha
Helix 64	AH1	C	537	548	Right-handed alpha
Helix 65	AH2	C	549	557	Right-handed alpha
Helix 66	AH3	C	563	571	Right-handed alpha
Helix 67	AH4	C	574	595	Right-handed alpha
Helix 68	AH5	D	47	62	Right-handed alpha
Helix 69	AH6	D	65	69	Right-handed 310
Helix 70	AH7	D	72	91	Right-handed alpha
Helix 71	AH8	D	107	121	Right-handed alpha
Helix 72	AH9	D	140	156	Right-handed alpha
Helix 73	AI1	D	176	188	Right-handed alpha
Helix 74	AI2	D	219	222	Right-handed 310
Helix 75	AI3	D	228	241	Right-handed alpha
Helix 76	AI4	D	255	260	Right-handed alpha
Helix 77	AI5	D	261	268	Right-handed alpha
Helix 78	AI6	D	280	293	Right-handed alpha
Helix 79	AI7	D	301	315	Right-handed alpha
Helix 80	AI8	D	318	331	Right-handed alpha
Helix 81	AI9	D	333	347	Right-handed alpha
Helix 82	AJ1	D	350	361	Right-handed alpha
Helix 83	AJ2	D	361	372	Right-handed alpha
Helix 84	AJ3	D	375	381	Right-handed alpha
Helix 85	AJ4	D	384	401	Right-handed alpha
Helix 86	AJ5	D	407	425	Right-handed alpha
Helix 87	AJ6	D	452	466	Right-handed alpha
Helix 88	AJ7	D	480	489	Right-handed alpha
Helix 89	AJ8	D	492	496	Right-handed 310
Helix 90	AJ9	D	498	502	Right-handed 310
Helix 91	AK1	D	509	517	Right-handed alpha
Helix 92	AK2	D	523	528	Right-handed 310
Helix 93	AK3	E	11	22	Right-handed alpha
Helix 94	AK4	E	25	29	Right-handed 310
Helix 95	AK5	E	42	54	Right-handed alpha
Helix 96	AK6	E	69	89	Right-handed alpha
Helix 97	AK7	E	98	102	Right-handed 310
Helix 98	AK8	E	104	117	Right-handed alpha
Helix 99	AK9	E	118	120	Right-handed 310
Helix 100	AL1	E	135	138	Right-handed 310
Helix 101	AL2	E	144	151	Right-handed alpha
Helix 102	AL3	E	152	156	Right-handed 310
Helix 103	AL4	E	172	178	Right-handed alpha
Helix 104	AL5	E	179	183	Right-handed 310
Helix 105	AL6	E	193	211	Right-handed alpha
Helix 106	AL7	E	212	222	Right-handed alpha
Helix 107	AL8	E	231	252	Right-handed alpha
Helix 108	AL9	E	254	271	Right-handed alpha
Helix 109	AM1	E	274	279	Right-handed alpha
Helix 110	AM2	E	280	288	Right-handed alpha
Helix 111	AM3	E	289	293	Right-handed 310
Helix 112	AM4	E	325	341	Right-handed alpha
Helix 113	AM5	E	345	349	Right-handed 310
Helix 114	AM6	E	372	376	Right-handed 310
Helix 115	AM7	E	382	394	Right-handed alpha
Helix 116	AM8	E	417	430	Right-handed alpha
Helix 117	AM9	E	455	466	Right-handed alpha
Helix 118	AN1	E	471	476	Right-handed alpha
Helix 119	AN2	F	281	291	Right-handed alpha
Helix 120	AN3	F	295	308	Right-handed alpha
Helix 121	AN4	F	309	313	Right-handed 310
Helix 122	AN5	F	315	332	Right-handed alpha
Helix 123	AN6	F	332	339	Right-handed alpha
Helix 124	AN7	F	342	351	Right-handed alpha
Helix 125	AN8	F	359	374	Right-handed alpha
Helix 126	AN9	F	376	386	Right-handed alpha
Helix 127	AO1	F	393	402	Right-handed alpha
Helix 128	AO2	F	414	430	Right-handed alpha

There are 11 sheets in PDB entry 7TJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	560	566	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	620	624	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	677	684	anti-parallel
Strand 4	A	770	773	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	455	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	22	25	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	198	205	parallel
Strand 3	C	232	240	parallel
Strand 4	C	103	108	parallel
Strand 5	C	263	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	467	468	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	599	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	271	274	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	32	37	parallel
Strand 5	E	186	189	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJF