Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TJI entry

There are 9 chains in PDB entry 7TJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 356	LEU 914
B	ALA 236	LYS 497
C	ALA 16	ILE 616
D	ASP 46	LEU 529
E	ASN 2	SER 475
F	LEU 272	GLU 426
G	T 21	A 61
H	T 24	A 64
I	SER 53	LEU 512

There are145 helices in PDB entry 7TJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	374	378	Right-handed 310
Helix 2	AA2	A	393	397	Right-handed 310
Helix 3	AA3	A	421	430	Right-handed alpha
Helix 4	AA4	A	453	469	Right-handed alpha
Helix 5	AA5	A	484	502	Right-handed alpha
Helix 6	AA6	A	516	518	Right-handed 310
Helix 7	AA7	A	522	534	Right-handed alpha
Helix 8	AA8	A	538	552	Right-handed alpha
Helix 9	AA9	A	554	558	Right-handed 310
Helix 10	AB1	A	567	572	Right-handed 310
Helix 11	AB2	A	576	586	Right-handed alpha
Helix 12	AB3	A	603	609	Right-handed alpha
Helix 13	AB4	A	610	618	Right-handed alpha
Helix 14	AB5	A	628	640	Right-handed alpha
Helix 15	AB6	A	685	700	Right-handed alpha
Helix 16	AB7	A	702	726	Right-handed alpha
Helix 17	AB8	A	774	784	Right-handed alpha
Helix 18	AB9	A	788	796	Right-handed alpha
Helix 19	AC1	A	798	815	Right-handed alpha
Helix 20	AC2	A	822	836	Right-handed alpha
Helix 21	AC3	A	839	852	Right-handed alpha
Helix 22	AC4	A	865	876	Right-handed alpha
Helix 23	AC5	A	897	908	Right-handed alpha
Helix 24	AC6	B	242	250	Right-handed alpha
Helix 25	AC7	B	254	258	Right-handed 310
Helix 26	AC8	B	262	266	Right-handed 310
Helix 27	AC9	B	270	284	Right-handed alpha
Helix 28	AD1	B	286	298	Right-handed alpha
Helix 29	AD2	B	300	310	Right-handed alpha
Helix 30	AD3	B	322	333	Right-handed alpha
Helix 31	AD4	B	333	342	Right-handed alpha
Helix 32	AD5	B	371	384	Right-handed alpha
Helix 33	AD6	B	398	412	Right-handed alpha
Helix 34	AD7	B	434	447	Right-handed alpha
Helix 35	AD8	B	460	465	Right-handed 310
Helix 36	AD9	B	466	474	Right-handed alpha
Helix 37	AE1	B	488	493	Right-handed 310
Helix 38	AE2	C	16	20	Right-handed 310
Helix 39	AE3	C	50	93	Right-handed alpha
Helix 40	AE4	C	138	158	Right-handed alpha
Helix 41	AE5	C	185	190	Right-handed alpha
Helix 42	AE6	C	190	196	Right-handed alpha
Helix 43	AE7	C	207	211	Right-handed 310
Helix 44	AE8	C	212	225	Right-handed alpha
Helix 45	AE9	C	226	229	Right-handed 310
Helix 46	AF1	C	244	249	Right-handed alpha
Helix 47	AF2	C	252	260	Right-handed alpha
Helix 48	AF3	C	276	288	Right-handed alpha
Helix 49	AF4	C	295	308	Right-handed alpha
Helix 50	AF5	C	313	332	Right-handed alpha
Helix 51	AF6	C	333	345	Right-handed 310
Helix 52	AF7	C	347	355	Right-handed alpha
Helix 53	AF8	C	357	369	Right-handed alpha
Helix 54	AF9	C	389	395	Right-handed alpha
Helix 55	AG1	C	401	416	Right-handed alpha
Helix 56	AG2	C	423	434	Right-handed alpha
Helix 57	AG3	C	435	441	Right-handed alpha
Helix 58	AG4	C	449	454	Right-handed alpha
Helix 59	AG5	C	462	465	Right-handed 310
Helix 60	AG6	C	473	479	Right-handed alpha
Helix 61	AG7	C	482	494	Right-handed alpha
Helix 62	AG8	C	510	517	Right-handed alpha
Helix 63	AG9	C	519	531	Right-handed alpha
Helix 64	AH1	C	537	548	Right-handed alpha
Helix 65	AH2	C	549	559	Right-handed alpha
Helix 66	AH3	C	563	571	Right-handed alpha
Helix 67	AH4	C	574	595	Right-handed alpha
Helix 68	AH5	D	47	61	Right-handed alpha
Helix 69	AH6	D	65	69	Right-handed 310
Helix 70	AH7	D	72	74	Right-handed 310
Helix 71	AH8	D	75	91	Right-handed alpha
Helix 72	AH9	D	107	121	Right-handed alpha
Helix 73	AI1	D	140	158	Right-handed alpha
Helix 74	AI2	D	176	189	Right-handed alpha
Helix 75	AI3	D	219	223	Right-handed 310
Helix 76	AI4	D	228	240	Right-handed alpha
Helix 77	AI5	D	255	260	Right-handed alpha
Helix 78	AI6	D	261	268	Right-handed alpha
Helix 79	AI7	D	280	293	Right-handed alpha
Helix 80	AI8	D	301	315	Right-handed alpha
Helix 81	AI9	D	318	331	Right-handed alpha
Helix 82	AJ1	D	333	347	Right-handed alpha
Helix 83	AJ2	D	350	361	Right-handed alpha
Helix 84	AJ3	D	361	372	Right-handed alpha
Helix 85	AJ4	D	375	381	Right-handed alpha
Helix 86	AJ5	D	384	401	Right-handed alpha
Helix 87	AJ6	D	407	424	Right-handed alpha
Helix 88	AJ7	D	452	466	Right-handed alpha
Helix 89	AJ8	D	480	489	Right-handed alpha
Helix 90	AJ9	D	492	496	Right-handed 310
Helix 91	AK1	D	498	502	Right-handed 310
Helix 92	AK2	D	509	517	Right-handed alpha
Helix 93	AK3	D	523	528	Right-handed 310
Helix 94	AK4	E	11	22	Right-handed alpha
Helix 95	AK5	E	25	29	Right-handed 310
Helix 96	AK6	E	42	54	Right-handed alpha
Helix 97	AK7	E	63	68	Right-handed alpha
Helix 98	AK8	E	69	89	Right-handed alpha
Helix 99	AK9	E	98	102	Right-handed 310
Helix 100	AL1	E	104	117	Right-handed alpha
Helix 101	AL2	E	135	138	Right-handed 310
Helix 102	AL3	E	144	152	Right-handed alpha
Helix 103	AL4	E	153	156	Right-handed 310
Helix 104	AL5	E	172	178	Right-handed alpha
Helix 105	AL6	E	179	183	Right-handed 310
Helix 106	AL7	E	193	211	Right-handed alpha
Helix 107	AL8	E	212	221	Right-handed alpha
Helix 108	AL9	E	230	252	Right-handed alpha
Helix 109	AM1	E	254	271	Right-handed alpha
Helix 110	AM2	E	280	288	Right-handed alpha
Helix 111	AM3	E	289	293	Right-handed 310
Helix 112	AM4	E	325	341	Right-handed alpha
Helix 113	AM5	E	342	349	Right-handed 310
Helix 114	AM6	E	372	376	Right-handed 310
Helix 115	AM7	E	382	394	Right-handed alpha
Helix 116	AM8	E	417	430	Right-handed alpha
Helix 117	AM9	E	455	466	Right-handed alpha
Helix 118	AN1	F	281	292	Right-handed alpha
Helix 119	AN2	F	295	309	Right-handed alpha
Helix 120	AN3	F	315	332	Right-handed alpha
Helix 121	AN4	F	332	339	Right-handed alpha
Helix 122	AN5	F	340	352	Right-handed alpha
Helix 123	AN6	F	359	371	Right-handed alpha
Helix 124	AN7	F	376	387	Right-handed alpha
Helix 125	AN8	F	393	403	Right-handed alpha
Helix 126	AN9	F	414	426	Right-handed alpha
Helix 127	AO1	I	54	62	Right-handed alpha
Helix 128	AO2	I	81	99	Right-handed alpha
Helix 129	AO3	I	113	125	Right-handed alpha
Helix 130	AO4	I	177	179	Right-handed 310
Helix 131	AO5	I	180	189	Right-handed alpha
Helix 132	AO6	I	201	210	Right-handed alpha
Helix 133	AO7	I	224	229	Right-handed 310
Helix 134	AO8	I	234	239	Right-handed alpha
Helix 135	AO9	I	239	249	Right-handed alpha
Helix 136	AP1	I	292	305	Right-handed alpha
Helix 137	AP2	I	313	325	Right-handed alpha
Helix 138	AP3	I	330	349	Right-handed alpha
Helix 139	AP4	I	386	397	Right-handed alpha
Helix 140	AP5	I	403	409	Right-handed alpha
Helix 141	AP6	I	411	428	Right-handed alpha
Helix 142	AP7	I	432	446	Right-handed alpha
Helix 143	AP8	I	454	468	Right-handed alpha
Helix 144	AP9	I	494	504	Right-handed alpha
Helix 145	AQ1	I	508	512	Right-handed 310

There are 14 sheets in PDB entry 7TJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	D	208	209	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	560	566	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	621	624	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	659	first strand
Strand 2	A	646	649	anti-parallel
Strand 3	A	679	684	anti-parallel
Strand 4	A	770	773	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	455	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	22	25	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	198	205	parallel
Strand 3	C	232	240	parallel
Strand 4	C	103	108	parallel
Strand 5	C	263	267	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	467	468	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	599	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	272	274	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	504	506	anti-parallel
Strand 3	D	469	471	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	32	37	parallel
Strand 5	E	186	189	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	155	first strand
Strand 2	I	163	171	anti-parallel
Strand 3	I	218	223	parallel
Strand 4	I	256	261	parallel
Strand 5	I	103	107	parallel
Strand 6	I	284	287	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	471	477	first strand
Strand 2	I	485	491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJI