Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TJJ entry

There are 9 chains in PDB entry 7TJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 356	LEU 914
B	LYS 234	LYS 497
C	ALA 16	ILE 616
D	ASP 46	LEU 529
E	ASN 2	HIS 478
F	SER 2	GLU 426
G	T 21	A 61
H	T 24	A 64
I	SER 53	LEU 512

There are154 helices in PDB entry 7TJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	374	378	Right-handed 310
Helix 2	AA2	A	387	391	Right-handed 310
Helix 3	AA3	A	423	430	Right-handed alpha
Helix 4	AA4	A	453	469	Right-handed alpha
Helix 5	AA5	A	484	502	Right-handed alpha
Helix 6	AA6	A	516	518	Right-handed 310
Helix 7	AA7	A	522	533	Right-handed alpha
Helix 8	AA8	A	538	552	Right-handed alpha
Helix 9	AA9	A	554	558	Right-handed 310
Helix 10	AB1	A	568	572	Right-handed 310
Helix 11	AB2	A	576	585	Right-handed alpha
Helix 12	AB3	A	586	588	Right-handed 310
Helix 13	AB4	A	603	608	Right-handed alpha
Helix 14	AB5	A	610	618	Right-handed alpha
Helix 15	AB6	A	628	640	Right-handed alpha
Helix 16	AB7	A	685	700	Right-handed alpha
Helix 17	AB8	A	702	726	Right-handed alpha
Helix 18	AB9	A	774	784	Right-handed alpha
Helix 19	AC1	A	788	796	Right-handed alpha
Helix 20	AC2	A	798	816	Right-handed alpha
Helix 21	AC3	A	822	836	Right-handed alpha
Helix 22	AC4	A	839	852	Right-handed alpha
Helix 23	AC5	A	865	876	Right-handed alpha
Helix 24	AC6	A	897	908	Right-handed alpha
Helix 25	AC7	A	908	914	Right-handed alpha
Helix 26	AC8	B	241	249	Right-handed alpha
Helix 27	AC9	B	254	258	Right-handed 310
Helix 28	AD1	B	270	285	Right-handed alpha
Helix 29	AD2	B	286	298	Right-handed alpha
Helix 30	AD3	B	300	310	Right-handed alpha
Helix 31	AD4	B	322	333	Right-handed alpha
Helix 32	AD5	B	333	343	Right-handed alpha
Helix 33	AD6	B	371	384	Right-handed alpha
Helix 34	AD7	B	390	394	Right-handed 310
Helix 35	AD8	B	398	412	Right-handed alpha
Helix 36	AD9	B	434	447	Right-handed alpha
Helix 37	AE1	B	460	465	Right-handed 310
Helix 38	AE2	B	466	474	Right-handed alpha
Helix 39	AE3	B	488	493	Right-handed 310
Helix 40	AE4	C	16	20	Right-handed 310
Helix 41	AE5	C	50	92	Right-handed alpha
Helix 42	AE6	C	138	158	Right-handed alpha
Helix 43	AE7	C	185	190	Right-handed alpha
Helix 44	AE8	C	190	196	Right-handed alpha
Helix 45	AE9	C	212	225	Right-handed alpha
Helix 46	AF1	C	226	229	Right-handed 310
Helix 47	AF2	C	243	249	Right-handed alpha
Helix 48	AF3	C	252	260	Right-handed alpha
Helix 49	AF4	C	274	286	Right-handed alpha
Helix 50	AF5	C	295	307	Right-handed alpha
Helix 51	AF6	C	313	332	Right-handed alpha
Helix 52	AF7	C	333	339	Right-handed 310
Helix 53	AF8	C	347	355	Right-handed alpha
Helix 54	AF9	C	357	371	Right-handed alpha
Helix 55	AG1	C	389	395	Right-handed alpha
Helix 56	AG2	C	401	414	Right-handed alpha
Helix 57	AG3	C	423	433	Right-handed alpha
Helix 58	AG4	C	435	441	Right-handed alpha
Helix 59	AG5	C	446	450	Right-handed 310
Helix 60	AG6	C	474	479	Right-handed alpha
Helix 61	AG7	C	482	493	Right-handed alpha
Helix 62	AG8	C	494	497	Right-handed 310
Helix 63	AG9	C	511	515	Right-handed alpha
Helix 64	AH1	C	519	530	Right-handed alpha
Helix 65	AH2	C	537	548	Right-handed alpha
Helix 66	AH3	C	549	557	Right-handed alpha
Helix 67	AH4	C	563	571	Right-handed alpha
Helix 68	AH5	C	574	595	Right-handed alpha
Helix 69	AH6	D	47	62	Right-handed alpha
Helix 70	AH7	D	65	69	Right-handed 310
Helix 71	AH8	D	72	74	Right-handed 310
Helix 72	AH9	D	75	91	Right-handed alpha
Helix 73	AI1	D	107	121	Right-handed alpha
Helix 74	AI2	D	140	158	Right-handed alpha
Helix 75	AI3	D	176	189	Right-handed alpha
Helix 76	AI4	D	228	241	Right-handed alpha
Helix 77	AI5	D	256	260	Right-handed 310
Helix 78	AI6	D	261	268	Right-handed alpha
Helix 79	AI7	D	280	293	Right-handed alpha
Helix 80	AI8	D	301	315	Right-handed alpha
Helix 81	AI9	D	318	331	Right-handed alpha
Helix 82	AJ1	D	333	347	Right-handed alpha
Helix 83	AJ2	D	350	361	Right-handed alpha
Helix 84	AJ3	D	361	372	Right-handed alpha
Helix 85	AJ4	D	375	382	Right-handed alpha
Helix 86	AJ5	D	384	401	Right-handed alpha
Helix 87	AJ6	D	407	424	Right-handed alpha
Helix 88	AJ7	D	452	466	Right-handed alpha
Helix 89	AJ8	D	480	489	Right-handed alpha
Helix 90	AJ9	D	492	496	Right-handed 310
Helix 91	AK1	D	498	502	Right-handed 310
Helix 92	AK2	D	509	517	Right-handed alpha
Helix 93	AK3	D	523	528	Right-handed 310
Helix 94	AK4	E	11	22	Right-handed alpha
Helix 95	AK5	E	25	29	Right-handed 310
Helix 96	AK6	E	42	53	Right-handed alpha
Helix 97	AK7	E	63	68	Right-handed alpha
Helix 98	AK8	E	69	89	Right-handed alpha
Helix 99	AK9	E	98	102	Right-handed 310
Helix 100	AL1	E	104	117	Right-handed alpha
Helix 101	AL2	E	134	138	Right-handed 310
Helix 102	AL3	E	144	151	Right-handed alpha
Helix 103	AL4	E	152	156	Right-handed 310
Helix 104	AL5	E	172	178	Right-handed alpha
Helix 105	AL6	E	179	183	Right-handed 310
Helix 106	AL7	E	193	211	Right-handed alpha
Helix 107	AL8	E	212	222	Right-handed alpha
Helix 108	AL9	E	230	252	Right-handed alpha
Helix 109	AM1	E	254	271	Right-handed alpha
Helix 110	AM2	E	280	288	Right-handed alpha
Helix 111	AM3	E	289	293	Right-handed 310
Helix 112	AM4	E	325	341	Right-handed alpha
Helix 113	AM5	E	342	346	Right-handed 310
Helix 114	AM6	E	372	376	Right-handed 310
Helix 115	AM7	E	382	394	Right-handed alpha
Helix 116	AM8	E	417	430	Right-handed alpha
Helix 117	AM9	E	455	466	Right-handed alpha
Helix 118	AN1	E	471	476	Right-handed alpha
Helix 119	AN2	F	3	15	Right-handed alpha
Helix 120	AN3	F	27	47	Right-handed alpha
Helix 121	AN4	F	52	55	Right-handed 310
Helix 122	AN5	F	56	73	Right-handed alpha
Helix 123	AN6	F	80	84	Right-handed 310
Helix 124	AN7	F	87	103	Right-handed alpha
Helix 125	AN8	F	281	291	Right-handed alpha
Helix 126	AN9	F	295	310	Right-handed alpha
Helix 127	AO1	F	311	313	Right-handed 310
Helix 128	AO2	F	315	332	Right-handed alpha
Helix 129	AO3	F	332	339	Right-handed alpha
Helix 130	AO4	F	340	343	Right-handed 310
Helix 131	AO5	F	347	352	Right-handed alpha
Helix 132	AO6	F	359	374	Right-handed alpha
Helix 133	AO7	F	376	386	Right-handed alpha
Helix 134	AO8	F	393	402	Right-handed alpha
Helix 135	AO9	F	414	426	Right-handed alpha
Helix 136	AP1	I	54	62	Right-handed alpha
Helix 137	AP2	I	81	97	Right-handed alpha
Helix 138	AP3	I	113	126	Right-handed alpha
Helix 139	AP4	I	177	179	Right-handed 310
Helix 140	AP5	I	180	190	Right-handed alpha
Helix 141	AP6	I	201	209	Right-handed alpha
Helix 142	AP7	I	225	229	Right-handed 310
Helix 143	AP8	I	234	239	Right-handed alpha
Helix 144	AP9	I	241	249	Right-handed alpha
Helix 145	AQ1	I	292	305	Right-handed alpha
Helix 146	AQ2	I	313	324	Right-handed alpha
Helix 147	AQ3	I	330	348	Right-handed alpha
Helix 148	AQ4	I	387	397	Right-handed alpha
Helix 149	AQ5	I	402	409	Right-handed alpha
Helix 150	AQ6	I	411	428	Right-handed alpha
Helix 151	AQ7	I	432	448	Right-handed alpha
Helix 152	AQ8	I	454	469	Right-handed alpha
Helix 153	AQ9	I	494	504	Right-handed alpha
Helix 154	AR1	I	508	512	Right-handed 310

There are 13 sheets in PDB entry 7TJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	560	566	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	622	624	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	650	anti-parallel
Strand 3	A	678	684	anti-parallel
Strand 4	A	770	773	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	455	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	22	25	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	198	205	parallel
Strand 3	C	232	240	parallel
Strand 4	C	103	108	parallel
Strand 5	C	263	267	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	467	468	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	598	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	126	132	parallel
Strand 3	E	162	170	parallel
Strand 4	E	32	37	parallel
Strand 5	E	186	189	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	155	first strand
Strand 2	I	163	171	anti-parallel
Strand 3	I	217	223	parallel
Strand 4	I	256	263	parallel
Strand 5	I	103	108	parallel
Strand 6	I	284	287	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	471	477	first strand
Strand 2	I	485	491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJJ