Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TJW entry

There are 7 chains in PDB entry 7TJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 28	THR 509
B	ASN 28	THR 509
C	LEU 27	THR 509
D	THR 10	ALA 474
E	PRO 8	ALA 475
F	THR 7	ALA 475
G	THR 2	SER 276

There are141 helices in PDB entry 7TJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	84	Right-handed 310
Helix 2	AA2	A	102	106	Right-handed 310
Helix 3	AA3	A	152	159	Right-handed alpha
Helix 4	AA4	A	176	188	Right-handed alpha
Helix 5	AA5	A	188	193	Right-handed alpha
Helix 6	AA6	A	211	225	Right-handed alpha
Helix 7	AA7	A	227	229	Right-handed 310
Helix 8	AA8	A	241	262	Right-handed alpha
Helix 9	AA9	A	273	287	Right-handed alpha
Helix 10	AB1	A	292	296	Right-handed 310
Helix 11	AB2	A	299	309	Right-handed alpha
Helix 12	AB3	A	332	335	Right-handed 310
Helix 13	AB4	A	338	348	Right-handed alpha
Helix 14	AB5	A	355	361	Right-handed alpha
Helix 15	AB6	A	376	380	Right-handed 310
Helix 16	AB7	A	382	403	Right-handed alpha
Helix 17	AB8	A	413	431	Right-handed alpha
Helix 18	AB9	A	439	452	Right-handed alpha
Helix 19	AC1	A	453	458	Right-handed 310
Helix 20	AC2	A	462	478	Right-handed alpha
Helix 21	AC3	A	479	489	Right-handed alpha
Helix 22	AC4	A	492	509	Right-handed alpha
Helix 23	AC5	B	80	84	Right-handed 310
Helix 24	AC6	B	102	106	Right-handed 310
Helix 25	AC7	B	112	114	Right-handed 310
Helix 26	AC8	B	152	159	Right-handed alpha
Helix 27	AC9	B	176	188	Right-handed alpha
Helix 28	AD1	B	188	193	Right-handed alpha
Helix 29	AD2	B	211	225	Right-handed alpha
Helix 30	AD3	B	226	229	Right-handed 310
Helix 31	AD4	B	241	262	Right-handed alpha
Helix 32	AD5	B	272	287	Right-handed alpha
Helix 33	AD6	B	292	296	Right-handed 310
Helix 34	AD7	B	297	298	Right-handed 310
Helix 35	AD8	B	299	309	Right-handed alpha
Helix 36	AD9	B	338	346	Right-handed alpha
Helix 37	AE1	B	355	361	Right-handed alpha
Helix 38	AE2	B	376	380	Right-handed 310
Helix 39	AE3	B	382	390	Right-handed alpha
Helix 40	AE4	B	391	404	Right-handed alpha
Helix 41	AE5	B	414	430	Right-handed alpha
Helix 42	AE6	B	439	453	Right-handed alpha
Helix 43	AE7	B	459	461	Right-handed 310
Helix 44	AE8	B	462	477	Right-handed alpha
Helix 45	AE9	B	478	489	Right-handed alpha
Helix 46	AF1	B	492	509	Right-handed alpha
Helix 47	AF2	C	102	106	Right-handed 310
Helix 48	AF3	C	152	159	Right-handed alpha
Helix 49	AF4	C	176	188	Right-handed alpha
Helix 50	AF5	C	188	193	Right-handed alpha
Helix 51	AF6	C	196	200	Right-handed 310
Helix 52	AF7	C	211	225	Right-handed alpha
Helix 53	AF8	C	226	229	Right-handed 310
Helix 54	AF9	C	241	263	Right-handed alpha
Helix 55	AG1	C	272	288	Right-handed alpha
Helix 56	AG2	C	292	296	Right-handed 310
Helix 57	AG3	C	299	309	Right-handed alpha
Helix 58	AG4	C	315	319	Right-handed 310
Helix 59	AG5	C	338	348	Right-handed alpha
Helix 60	AG6	C	355	361	Right-handed alpha
Helix 61	AG7	C	376	380	Right-handed 310
Helix 62	AG8	C	382	390	Right-handed alpha
Helix 63	AG9	C	391	404	Right-handed alpha
Helix 64	AH1	C	405	409	Right-handed 310
Helix 65	AH2	C	413	429	Right-handed alpha
Helix 66	AH3	C	439	452	Right-handed alpha
Helix 67	AH4	C	459	461	Right-handed 310
Helix 68	AH5	C	462	478	Right-handed alpha
Helix 69	AH6	C	478	488	Right-handed alpha
Helix 70	AH7	C	492	508	Right-handed alpha
Helix 71	AH8	D	88	92	Right-handed 310
Helix 72	AH9	D	138	145	Right-handed alpha
Helix 73	AI1	D	162	175	Right-handed alpha
Helix 74	AI2	D	190	204	Right-handed alpha
Helix 75	AI3	D	225	246	Right-handed alpha
Helix 76	AI4	D	257	272	Right-handed alpha
Helix 77	AI5	D	277	281	Right-handed 310
Helix 78	AI6	D	282	283	Right-handed 310
Helix 79	AI7	D	284	296	Right-handed alpha
Helix 80	AI8	D	313	316	Right-handed 310
Helix 81	AI9	D	319	326	Right-handed alpha
Helix 82	AJ1	D	327	329	Right-handed 310
Helix 83	AJ2	D	336	342	Right-handed alpha
Helix 84	AJ3	D	359	364	Right-handed alpha
Helix 85	AJ4	D	364	392	Right-handed alpha
Helix 86	AJ5	D	393	396	Right-handed 310
Helix 87	AJ6	D	397	414	Right-handed alpha
Helix 88	AJ7	D	418	423	Right-handed 310
Helix 89	AJ8	D	433	447	Right-handed alpha
Helix 90	AJ9	D	453	457	Right-handed 310
Helix 91	AK1	D	462	474	Right-handed alpha
Helix 92	AK2	E	88	92	Right-handed 310
Helix 93	AK3	E	138	145	Right-handed alpha
Helix 94	AK4	E	162	179	Right-handed alpha
Helix 95	AK5	E	190	205	Right-handed alpha
Helix 96	AK6	E	225	246	Right-handed alpha
Helix 97	AK7	E	257	272	Right-handed alpha
Helix 98	AK8	E	277	281	Right-handed 310
Helix 99	AK9	E	282	283	Right-handed 310
Helix 100	AL1	E	284	294	Right-handed alpha
Helix 101	AL2	E	312	316	Right-handed 310
Helix 102	AL3	E	319	327	Right-handed alpha
Helix 103	AL4	E	336	342	Right-handed alpha
Helix 104	AL5	E	359	392	Right-handed alpha
Helix 105	AL6	E	397	415	Right-handed alpha
Helix 106	AL7	E	433	447	Right-handed alpha
Helix 107	AL8	E	462	475	Right-handed alpha
Helix 108	AL9	F	88	92	Right-handed 310
Helix 109	AM1	F	123	127	Right-handed 310
Helix 110	AM2	F	138	145	Right-handed alpha
Helix 111	AM3	F	162	175	Right-handed alpha
Helix 112	AM4	F	176	178	Right-handed 310
Helix 113	AM5	F	190	203	Right-handed alpha
Helix 114	AM6	F	225	246	Right-handed alpha
Helix 115	AM7	F	258	273	Right-handed alpha
Helix 116	AM8	F	277	281	Right-handed 310
Helix 117	AM9	F	284	294	Right-handed alpha
Helix 118	AN1	F	295	297	Right-handed 310
Helix 119	AN2	F	313	316	Right-handed 310
Helix 120	AN3	F	319	328	Right-handed alpha
Helix 121	AN4	F	336	342	Right-handed alpha
Helix 122	AN5	F	359	364	Right-handed alpha
Helix 123	AN6	F	364	391	Right-handed alpha
Helix 124	AN7	F	392	396	Right-handed 310
Helix 125	AN8	F	397	414	Right-handed alpha
Helix 126	AN9	F	418	420	Right-handed 310
Helix 127	AO1	F	421	426	Right-handed alpha
Helix 128	AO2	F	433	446	Right-handed alpha
Helix 129	AO3	F	453	458	Right-handed 310
Helix 130	AO4	F	462	475	Right-handed alpha
Helix 131	AO5	G	3	56	Right-handed alpha
Helix 132	AO6	G	86	100	Right-handed alpha
Helix 133	AO7	G	111	119	Right-handed alpha
Helix 134	AO8	G	120	121	Right-handed 310
Helix 135	AO9	G	122	126	Right-handed 310
Helix 136	AP1	G	132	136	Right-handed 310
Helix 137	AP2	G	139	153	Right-handed alpha
Helix 138	AP3	G	155	159	Right-handed 310
Helix 139	AP4	G	184	191	Right-handed alpha
Helix 140	AP5	G	193	198	Right-handed alpha
Helix 141	AP6	G	206	275	Right-handed alpha

There are 22 sheets in PDB entry 7TJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	30	36	anti-parallel
Strand 5	A	40	45	anti-parallel
Strand 6	A	73	77	anti-parallel
Strand 7	A	62	68	anti-parallel
Strand 8	E	10	17	anti-parallel
Strand 9	E	75	78	anti-parallel
Strand 10	E	36	40	anti-parallel
Strand 11	E	45	55	anti-parallel
Strand 12	E	58	63	anti-parallel
Strand 13	E	20	24	anti-parallel
Strand 14	E	10	17	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	127	130	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	271	parallel
Strand 5	A	321	330	parallel
Strand 6	A	312	314	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	271	parallel
Strand 5	A	321	330	parallel
Strand 6	A	168	171	parallel
Strand 7	A	350	353	parallel
Strand 8	A	373	374	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	37	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	62	69	anti-parallel
Strand 5	B	53	56	anti-parallel
Strand 6	B	89	96	anti-parallel
Strand 7	B	31	37	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	127	130	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	109	111	anti-parallel
Strand 3	B	231	236	parallel
Strand 4	B	202	208	parallel
Strand 5	B	266	271	parallel
Strand 6	B	321	330	parallel
Strand 7	B	312	314	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	109	111	anti-parallel
Strand 3	B	231	236	parallel
Strand 4	B	202	208	parallel
Strand 5	B	266	271	parallel
Strand 6	B	321	330	parallel
Strand 7	B	168	171	parallel
Strand 8	B	350	353	parallel
Strand 9	B	373	374	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	44	55	anti-parallel
Strand 4	D	58	63	anti-parallel
Strand 5	D	20	24	anti-parallel
Strand 6	D	12	17	anti-parallel
Strand 7	C	62	69	anti-parallel
Strand 8	C	72	77	anti-parallel
Strand 9	C	40	45	anti-parallel
Strand 10	C	30	37	anti-parallel
Strand 11	C	89	96	anti-parallel
Strand 12	C	53	57	anti-parallel
Strand 13	C	62	69	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	127	130	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	231	236	parallel
Strand 3	C	202	208	parallel
Strand 4	C	265	271	parallel
Strand 5	C	322	330	parallel
Strand 6	C	312	313	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	231	236	parallel
Strand 3	C	202	208	parallel
Strand 4	C	265	271	parallel
Strand 5	C	322	330	parallel
Strand 6	C	168	171	parallel
Strand 7	C	351	354	parallel
Strand 8	C	367	368	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	114	116	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	215	221	parallel
Strand 3	D	182	189	parallel
Strand 4	D	251	256	parallel
Strand 5	D	304	311	parallel
Strand 6	D	152	157	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	147	148	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	114	116	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	215	219	parallel
Strand 3	E	182	186	parallel
Strand 4	E	251	256	parallel
Strand 5	E	304	309	parallel
Strand 6	E	152	156	parallel
Strand 7	E	331	334	parallel
Strand 8	E	354	355	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	17	first strand
Strand 2	F	20	24	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	46	55	anti-parallel
Strand 5	F	35	39	anti-parallel
Strand 6	F	75	82	anti-parallel
Strand 7	F	10	17	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	114	116	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	215	220	parallel
Strand 3	F	181	187	parallel
Strand 4	F	251	256	parallel
Strand 5	F	304	311	parallel
Strand 6	F	152	157	parallel
Strand 7	F	331	334	parallel
Strand 8	F	354	355	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	147	148	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	163	171	parallel
Strand 3	G	174	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TJW