Analysis of interatomic Contacts of Structural Units in PDB entry:
7TLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TLM entry

There are 2 chains in PDB entry 7TLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 374
A
 ALA 376VAL 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7TLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
14 17Right-handed 310
Helix 3
AA3
A
18 24Right-handed alpha
Helix 4
AA4
A
39 53Right-handed alpha
Helix 5
AA5
A
62 83Right-handed alpha
Helix 6
AA6
A
93 95Right-handed 310
Helix 7
AA7
A
102 119Right-handed alpha
Helix 8
AA8
A
132 135Right-handed 310
Helix 9
AA9
A
136 147Right-handed alpha
Helix 10
AB1
A
162 170Right-handed alpha
Helix 11
AB2
A
191 202Right-handed alpha
Helix 12
AB3
A
220 225Right-handed alpha
Helix 13
AB4
A
234 236Right-handed 310
Helix 14
AB5
A
248 255Right-handed alpha
Helix 15
AB6
A
279 283Right-handed 310
Helix 16
AB7
A
288 306Right-handed alpha
Helix 17
AB8
A
306 327Right-handed alpha
Helix 18
AB9
A
338 342Right-handed 310
Helix 19
AC1
A
354 365Right-handed alpha
Helix 20
AC2
A
376 383Right-handed alpha
Helix 21
AC3
A
398 417Right-handed alpha
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There are 4 sheets in PDB entry 7TLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
367 368parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
205 209parallel
Strand 5
A
174 180parallel
Strand 6
A
124 128parallel
Strand 7
A
149 153parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
273 275anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
388 392anti-parallel
Strand 4
A
370 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il