Analysis of interatomic Contacts of Structural Units in PDB entry:
7TM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TM9 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 7TM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 24	ASP 116
A	ALA 118	LYS 464
B	ASN 24	ASP 116
B	ALA 118	LYS 464
C	ASN 24	ASP 116
C	ALA 118	LYS 464
D	ASN 24	ASP 116
D	ALA 118	LYS 464
E	ASN 24	ASP 116
E	ALA 118	LYS 464
F	ASN 24	ASP 116
F	ALA 118	LYS 464
G	ASN 24	ASP 116
G	ALA 118	LYS 464
H	ASN 24	ASP 116
H	ALA 118	LYS 464

There are144 helices in PDB entry 7TM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	52	Right-handed alpha
Helix 2	AA2	A	69	82	Right-handed alpha
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	116	127	Right-handed alpha
Helix 5	AA5	A	146	155	Right-handed alpha
Helix 6	AA6	A	168	173	Right-handed alpha
Helix 7	AA7	A	185	193	Right-handed alpha
Helix 8	AA8	A	197	201	Right-handed 310
Helix 9	AA9	A	205	214	Right-handed alpha
Helix 10	AB1	A	223	228	Right-handed 310
Helix 11	AB2	A	239	247	Right-handed alpha
Helix 12	AB3	A	254	261	Right-handed alpha
Helix 13	AB4	A	291	296	Right-handed alpha
Helix 14	AB5	A	313	326	Right-handed alpha
Helix 15	AB6	A	339	347	Right-handed alpha
Helix 16	AB7	A	349	375	Right-handed alpha
Helix 17	AB8	A	440	445	Right-handed 310
Helix 18	AB9	A	450	461	Right-handed alpha
Helix 19	AC1	B	44	51	Right-handed alpha
Helix 20	AC2	B	69	82	Right-handed alpha
Helix 21	AC3	B	89	93	Right-handed 310
Helix 22	AC4	B	116	127	Right-handed alpha
Helix 23	AC5	B	146	154	Right-handed alpha
Helix 24	AC6	B	168	173	Right-handed alpha
Helix 25	AC7	B	185	193	Right-handed alpha
Helix 26	AC8	B	197	201	Right-handed 310
Helix 27	AC9	B	205	214	Right-handed alpha
Helix 28	AD1	B	223	228	Right-handed 310
Helix 29	AD2	B	239	247	Right-handed alpha
Helix 30	AD3	B	254	261	Right-handed alpha
Helix 31	AD4	B	291	296	Right-handed alpha
Helix 32	AD5	B	313	326	Right-handed alpha
Helix 33	AD6	B	339	347	Right-handed alpha
Helix 34	AD7	B	349	375	Right-handed alpha
Helix 35	AD8	B	440	445	Right-handed 310
Helix 36	AD9	B	450	461	Right-handed alpha
Helix 37	AE1	C	44	52	Right-handed alpha
Helix 38	AE2	C	69	82	Right-handed alpha
Helix 39	AE3	C	89	93	Right-handed 310
Helix 40	AE4	C	116	127	Right-handed alpha
Helix 41	AE5	C	146	154	Right-handed alpha
Helix 42	AE6	C	168	173	Right-handed alpha
Helix 43	AE7	C	185	193	Right-handed alpha
Helix 44	AE8	C	194	201	Right-handed 310
Helix 45	AE9	C	205	214	Right-handed alpha
Helix 46	AF1	C	222	227	Right-handed alpha
Helix 47	AF2	C	239	247	Right-handed alpha
Helix 48	AF3	C	254	261	Right-handed alpha
Helix 49	AF4	C	291	296	Right-handed alpha
Helix 50	AF5	C	313	326	Right-handed alpha
Helix 51	AF6	C	339	347	Right-handed alpha
Helix 52	AF7	C	349	375	Right-handed alpha
Helix 53	AF8	C	440	445	Right-handed 310
Helix 54	AF9	C	450	461	Right-handed alpha
Helix 55	AG1	D	44	52	Right-handed alpha
Helix 56	AG2	D	69	81	Right-handed alpha
Helix 57	AG3	D	89	93	Right-handed 310
Helix 58	AG4	D	116	127	Right-handed alpha
Helix 59	AG5	D	146	154	Right-handed alpha
Helix 60	AG6	D	168	173	Right-handed alpha
Helix 61	AG7	D	185	193	Right-handed alpha
Helix 62	AG8	D	197	201	Right-handed 310
Helix 63	AG9	D	205	214	Right-handed alpha
Helix 64	AH1	D	222	228	Right-handed 310
Helix 65	AH2	D	239	247	Right-handed alpha
Helix 66	AH3	D	254	261	Right-handed alpha
Helix 67	AH4	D	291	296	Right-handed alpha
Helix 68	AH5	D	313	326	Right-handed alpha
Helix 69	AH6	D	339	347	Right-handed alpha
Helix 70	AH7	D	349	375	Right-handed alpha
Helix 71	AH8	D	440	445	Right-handed 310
Helix 72	AH9	D	450	461	Right-handed alpha
Helix 73	AI1	E	44	52	Right-handed alpha
Helix 74	AI2	E	69	81	Right-handed alpha
Helix 75	AI3	E	89	93	Right-handed 310
Helix 76	AI4	E	116	127	Right-handed alpha
Helix 77	AI5	E	146	154	Right-handed alpha
Helix 78	AI6	E	168	173	Right-handed alpha
Helix 79	AI7	E	185	193	Right-handed alpha
Helix 80	AI8	E	197	201	Right-handed 310
Helix 81	AI9	E	205	214	Right-handed alpha
Helix 82	AJ1	E	223	228	Right-handed 310
Helix 83	AJ2	E	239	247	Right-handed alpha
Helix 84	AJ3	E	254	261	Right-handed alpha
Helix 85	AJ4	E	291	296	Right-handed alpha
Helix 86	AJ5	E	313	326	Right-handed alpha
Helix 87	AJ6	E	339	347	Right-handed alpha
Helix 88	AJ7	E	349	375	Right-handed alpha
Helix 89	AJ8	E	440	445	Right-handed 310
Helix 90	AJ9	E	450	461	Right-handed alpha
Helix 91	AK1	F	44	51	Right-handed alpha
Helix 92	AK2	F	69	82	Right-handed alpha
Helix 93	AK3	F	89	93	Right-handed 310
Helix 94	AK4	F	116	127	Right-handed alpha
Helix 95	AK5	F	146	154	Right-handed alpha
Helix 96	AK6	F	168	173	Right-handed alpha
Helix 97	AK7	F	185	193	Right-handed alpha
Helix 98	AK8	F	194	201	Right-handed 310
Helix 99	AK9	F	205	214	Right-handed alpha
Helix 100	AL1	F	222	227	Right-handed alpha
Helix 101	AL2	F	239	247	Right-handed alpha
Helix 102	AL3	F	254	260	Right-handed alpha
Helix 103	AL4	F	291	296	Right-handed alpha
Helix 104	AL5	F	313	326	Right-handed alpha
Helix 105	AL6	F	339	347	Right-handed alpha
Helix 106	AL7	F	349	375	Right-handed alpha
Helix 107	AL8	F	440	445	Right-handed 310
Helix 108	AL9	F	450	461	Right-handed alpha
Helix 109	AM1	G	44	52	Right-handed alpha
Helix 110	AM2	G	69	81	Right-handed alpha
Helix 111	AM3	G	89	93	Right-handed 310
Helix 112	AM4	G	116	127	Right-handed alpha
Helix 113	AM5	G	146	154	Right-handed alpha
Helix 114	AM6	G	168	173	Right-handed alpha
Helix 115	AM7	G	185	193	Right-handed alpha
Helix 116	AM8	G	197	201	Right-handed 310
Helix 117	AM9	G	205	214	Right-handed alpha
Helix 118	AN1	G	223	228	Right-handed 310
Helix 119	AN2	G	239	247	Right-handed alpha
Helix 120	AN3	G	254	261	Right-handed alpha
Helix 121	AN4	G	291	296	Right-handed alpha
Helix 122	AN5	G	313	326	Right-handed alpha
Helix 123	AN6	G	339	347	Right-handed alpha
Helix 124	AN7	G	349	375	Right-handed alpha
Helix 125	AN8	G	440	445	Right-handed 310
Helix 126	AN9	G	450	461	Right-handed alpha
Helix 127	AO1	H	44	52	Right-handed alpha
Helix 128	AO2	H	69	81	Right-handed alpha
Helix 129	AO3	H	89	93	Right-handed 310
Helix 130	AO4	H	116	127	Right-handed alpha
Helix 131	AO5	H	146	154	Right-handed alpha
Helix 132	AO6	H	168	173	Right-handed alpha
Helix 133	AO7	H	185	193	Right-handed alpha
Helix 134	AO8	H	197	201	Right-handed 310
Helix 135	AO9	H	205	214	Right-handed alpha
Helix 136	AP1	H	223	228	Right-handed 310
Helix 137	AP2	H	239	247	Right-handed alpha
Helix 138	AP3	H	254	261	Right-handed alpha
Helix 139	AP4	H	291	296	Right-handed alpha
Helix 140	AP5	H	313	326	Right-handed alpha
Helix 141	AP6	H	339	347	Right-handed alpha
Helix 142	AP7	H	349	375	Right-handed alpha
Helix 143	AP8	H	440	445	Right-handed 310
Helix 144	AP9	H	450	461	Right-handed alpha

There are 32 sheets in PDB entry 7TM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	252	first strand
Strand 2	A	270	273	parallel
Strand 3	A	217	221	parallel
Strand 4	A	157	165	parallel
Strand 5	A	332	338	parallel
Strand 6	A	59	65	parallel
Strand 7	A	377	383	parallel
Strand 8	A	432	437	anti-parallel
Strand 9	A	95	100	anti-parallel
Strand 10	A	446	449	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	302	303	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	412	417	anti-parallel
Strand 3	A	401	406	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	270	273	parallel
Strand 3	B	217	221	parallel
Strand 4	B	157	165	parallel
Strand 5	B	332	338	parallel
Strand 6	B	59	65	parallel
Strand 7	B	377	382	parallel
Strand 8	B	432	437	anti-parallel
Strand 9	B	95	100	anti-parallel
Strand 10	B	446	449	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	111	112	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	401	406	anti-parallel
Strand 3	B	412	417	anti-parallel
Strand 4	B	390	392	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	270	273	parallel
Strand 3	C	217	221	parallel
Strand 4	C	157	165	parallel
Strand 5	C	332	338	parallel
Strand 6	C	59	65	parallel
Strand 7	C	377	383	parallel
Strand 8	C	432	437	anti-parallel
Strand 9	C	95	100	anti-parallel
Strand 10	C	446	449	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	111	112	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	302	303	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	392	first strand
Strand 2	C	412	417	anti-parallel
Strand 3	C	401	406	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	252	first strand
Strand 2	D	270	273	parallel
Strand 3	D	217	221	parallel
Strand 4	D	157	165	parallel
Strand 5	D	332	338	parallel
Strand 6	D	59	65	parallel
Strand 7	D	377	383	parallel
Strand 8	D	432	437	anti-parallel
Strand 9	D	95	100	anti-parallel
Strand 10	D	446	449	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	111	112	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	302	303	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	390	392	first strand
Strand 2	D	412	417	anti-parallel
Strand 3	D	401	406	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	252	first strand
Strand 2	E	270	273	parallel
Strand 3	E	217	221	parallel
Strand 4	E	157	165	parallel
Strand 5	E	332	338	parallel
Strand 6	E	59	65	parallel
Strand 7	E	377	383	parallel
Strand 8	E	432	437	anti-parallel
Strand 9	E	95	100	anti-parallel
Strand 10	E	446	449	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	104	first strand
Strand 2	E	111	112	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	284	first strand
Strand 2	E	302	303	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	392	first strand
Strand 2	E	412	417	anti-parallel
Strand 3	E	401	406	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	252	first strand
Strand 2	F	270	273	parallel
Strand 3	F	217	221	parallel
Strand 4	F	157	165	parallel
Strand 5	F	332	338	parallel
Strand 6	F	59	65	parallel
Strand 7	F	377	383	parallel
Strand 8	F	432	437	anti-parallel
Strand 9	F	95	100	anti-parallel
Strand 10	F	446	449	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	104	first strand
Strand 2	F	111	112	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	284	first strand
Strand 2	F	302	303	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	390	392	first strand
Strand 2	F	412	417	anti-parallel
Strand 3	F	401	406	anti-parallel

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There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	252	first strand
Strand 2	G	270	273	parallel
Strand 3	G	217	221	parallel
Strand 4	G	157	165	parallel
Strand 5	G	332	338	parallel
Strand 6	G	59	65	parallel
Strand 7	G	377	383	parallel
Strand 8	G	432	437	anti-parallel
Strand 9	G	95	100	anti-parallel
Strand 10	G	446	449	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	104	first strand
Strand 2	G	111	112	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	284	first strand
Strand 2	G	302	303	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	390	392	first strand
Strand 2	G	412	417	anti-parallel
Strand 3	G	401	406	anti-parallel

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There are 10 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	250	252	first strand
Strand 2	H	270	273	parallel
Strand 3	H	217	221	parallel
Strand 4	H	157	165	parallel
Strand 5	H	332	338	parallel
Strand 6	H	59	65	parallel
Strand 7	H	377	382	parallel
Strand 8	H	432	437	anti-parallel
Strand 9	H	95	100	anti-parallel
Strand 10	H	446	449	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	104	first strand
Strand 2	H	111	112	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	284	first strand
Strand 2	H	302	303	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	390	392	first strand
Strand 2	H	412	417	anti-parallel
Strand 3	H	401	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TM9