Analysis of interatomic Contacts of Structural Units in PDB entry:
7TMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TMB entry

There are 6 chains in PDB entry 7TMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	LEU 373
B	ALA 12	LEU 373
C	ALA 12	LEU 373
D	ALA 12	LEU 373
E	ALA 12	LEU 373
F	ALA 12	LEU 373

There are 96 helices in PDB entry 7TMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	85	102	Right-handed alpha
Helix 4	AA4	A	118	126	Right-handed 310
Helix 5	AA5	A	161	163	Right-handed 310
Helix 6	AA6	A	164	182	Right-handed alpha
Helix 7	AA7	A	195	202	Right-handed alpha
Helix 8	AA8	A	215	220	Right-handed alpha
Helix 9	AA9	A	220	234	Right-handed alpha
Helix 10	AB1	A	235	237	Right-handed 310
Helix 11	AB2	A	257	272	Right-handed alpha
Helix 12	AB3	A	291	302	Right-handed alpha
Helix 13	AB4	A	313	323	Right-handed alpha
Helix 14	AB5	A	332	338	Right-handed alpha
Helix 15	AB6	A	340	347	Right-handed alpha
Helix 16	AB7	A	355	359	Right-handed 310
Helix 17	AB8	B	12	16	Right-handed 310
Helix 18	AB9	B	47	57	Right-handed alpha
Helix 19	AC1	B	71	75	Right-handed 310
Helix 20	AC2	B	85	101	Right-handed alpha
Helix 21	AC3	B	118	126	Right-handed 310
Helix 22	AC4	B	161	163	Right-handed 310
Helix 23	AC5	B	164	182	Right-handed alpha
Helix 24	AC6	B	195	202	Right-handed alpha
Helix 25	AC7	B	215	220	Right-handed alpha
Helix 26	AC8	B	220	234	Right-handed alpha
Helix 27	AC9	B	235	237	Right-handed 310
Helix 28	AD1	B	257	272	Right-handed alpha
Helix 29	AD2	B	291	302	Right-handed alpha
Helix 30	AD3	B	313	323	Right-handed alpha
Helix 31	AD4	B	332	338	Right-handed alpha
Helix 32	AD5	B	340	347	Right-handed alpha
Helix 33	AD6	B	355	359	Right-handed 310
Helix 34	AD7	C	12	16	Right-handed 310
Helix 35	AD8	C	47	57	Right-handed alpha
Helix 36	AD9	C	85	101	Right-handed alpha
Helix 37	AE1	C	118	126	Right-handed 310
Helix 38	AE2	C	161	163	Right-handed 310
Helix 39	AE3	C	164	182	Right-handed alpha
Helix 40	AE4	C	195	202	Right-handed alpha
Helix 41	AE5	C	215	234	Right-handed alpha
Helix 42	AE6	C	235	237	Right-handed 310
Helix 43	AE7	C	257	272	Right-handed alpha
Helix 44	AE8	C	291	302	Right-handed alpha
Helix 45	AE9	C	313	323	Right-handed alpha
Helix 46	AF1	C	332	338	Right-handed alpha
Helix 47	AF2	C	340	347	Right-handed alpha
Helix 48	AF3	C	355	359	Right-handed 310
Helix 49	AF4	D	12	16	Right-handed 310
Helix 50	AF5	D	47	57	Right-handed alpha
Helix 51	AF6	D	85	101	Right-handed alpha
Helix 52	AF7	D	118	126	Right-handed 310
Helix 53	AF8	D	161	163	Right-handed 310
Helix 54	AF9	D	164	182	Right-handed alpha
Helix 55	AG1	D	195	202	Right-handed alpha
Helix 56	AG2	D	215	220	Right-handed alpha
Helix 57	AG3	D	220	234	Right-handed alpha
Helix 58	AG4	D	235	237	Right-handed 310
Helix 59	AG5	D	257	272	Right-handed alpha
Helix 60	AG6	D	291	302	Right-handed alpha
Helix 61	AG7	D	313	323	Right-handed alpha
Helix 62	AG8	D	332	338	Right-handed alpha
Helix 63	AG9	D	340	347	Right-handed alpha
Helix 64	AH1	D	355	359	Right-handed 310
Helix 65	AH2	E	12	16	Right-handed 310
Helix 66	AH3	E	47	56	Right-handed alpha
Helix 67	AH4	E	85	101	Right-handed alpha
Helix 68	AH5	E	118	126	Right-handed 310
Helix 69	AH6	E	161	163	Right-handed 310
Helix 70	AH7	E	164	182	Right-handed alpha
Helix 71	AH8	E	195	202	Right-handed alpha
Helix 72	AH9	E	215	234	Right-handed alpha
Helix 73	AI1	E	235	237	Right-handed 310
Helix 74	AI2	E	257	272	Right-handed alpha
Helix 75	AI3	E	281	286	Right-handed alpha
Helix 76	AI4	E	291	302	Right-handed alpha
Helix 77	AI5	E	313	323	Right-handed alpha
Helix 78	AI6	E	332	338	Right-handed alpha
Helix 79	AI7	E	340	347	Right-handed alpha
Helix 80	AI8	E	355	359	Right-handed 310
Helix 81	AI9	F	12	16	Right-handed 310
Helix 82	AJ1	F	47	57	Right-handed alpha
Helix 83	AJ2	F	85	101	Right-handed alpha
Helix 84	AJ3	F	118	126	Right-handed 310
Helix 85	AJ4	F	161	163	Right-handed 310
Helix 86	AJ5	F	164	182	Right-handed alpha
Helix 87	AJ6	F	195	202	Right-handed alpha
Helix 88	AJ7	F	215	220	Right-handed alpha
Helix 89	AJ8	F	220	234	Right-handed alpha
Helix 90	AJ9	F	235	237	Right-handed 310
Helix 91	AK1	F	257	272	Right-handed alpha
Helix 92	AK2	F	291	302	Right-handed alpha
Helix 93	AK3	F	313	323	Right-handed alpha
Helix 94	AK4	F	332	338	Right-handed alpha
Helix 95	AK5	F	340	347	Right-handed alpha
Helix 96	AK6	F	355	359	Right-handed 310

There are 30 sheets in PDB entry 7TMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	23	25	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	106	111	parallel
Strand 3	A	186	191	parallel
Strand 4	A	239	243	parallel
Strand 5	A	276	280	parallel
Strand 6	A	305	309	parallel
Strand 7	A	328	331	parallel
Strand 8	A	29	31	parallel
Strand 9	A	63	64	parallel
Strand 10	A	106	111	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	158	159	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	149	153	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	252	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	23	25	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	106	111	parallel
Strand 3	B	186	191	parallel
Strand 4	B	239	243	parallel
Strand 5	B	276	280	parallel
Strand 6	B	305	309	parallel
Strand 7	B	328	331	parallel
Strand 8	B	29	31	parallel
Strand 9	B	63	64	parallel
Strand 10	B	106	111	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	158	159	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	149	153	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	252	253	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	23	25	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	106	111	parallel
Strand 3	C	186	191	parallel
Strand 4	C	239	243	parallel
Strand 5	C	276	280	parallel
Strand 6	C	305	309	parallel
Strand 7	C	328	331	parallel
Strand 8	C	29	31	parallel
Strand 9	C	63	64	parallel
Strand 10	C	106	111	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	158	159	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	149	153	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	252	253	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	23	25	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	106	111	parallel
Strand 3	D	186	191	parallel
Strand 4	D	239	243	parallel
Strand 5	D	276	280	parallel
Strand 6	D	305	309	parallel
Strand 7	D	328	331	parallel
Strand 8	D	29	31	parallel
Strand 9	D	62	64	parallel
Strand 10	D	106	111	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	158	159	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	149	153	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	252	253	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	23	25	anti-parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	106	111	parallel
Strand 3	E	186	191	parallel
Strand 4	E	239	243	parallel
Strand 5	E	276	280	parallel
Strand 6	E	305	309	parallel
Strand 7	E	328	331	parallel
Strand 8	E	29	31	parallel
Strand 9	E	62	64	parallel
Strand 10	E	106	111	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	158	159	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	149	153	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	252	253	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	23	25	anti-parallel

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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	106	111	parallel
Strand 3	F	186	191	parallel
Strand 4	F	239	243	parallel
Strand 5	F	276	280	parallel
Strand 6	F	305	309	parallel
Strand 7	F	328	331	parallel
Strand 8	F	29	31	parallel
Strand 9	F	63	64	parallel
Strand 10	F	106	111	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	158	159	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	149	153	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	249	first strand
Strand 2	F	252	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TMB