Analysis of interatomic Contacts of Structural Units in PDB entry:
7TMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TMD entry

There are 6 chains in PDB entry 7TMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ARG 342
B
 MET 9ARG 342
C
 SER 10ARG 342
D
 ALA 11SER 341
E
 HIS 8SER 341
F
 ALA 11SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are105 helices in PDB entry 7TMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
24 44Right-handed alpha
Helix 3
AA3
A
64 78Right-handed alpha
Helix 4
AA4
A
97 109Right-handed alpha
Helix 5
AA5
A
118 130Right-handed alpha
Helix 6
AA6
A
142 157Right-handed alpha
Helix 7
AA7
A
161 164Right-handed 310
Helix 8
AA8
A
175 189Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
203 217Right-handed alpha
Helix 11
AB2
A
226 232Right-handed alpha
Helix 12
AB3
A
248 260Right-handed alpha
Helix 13
AB4
A
261 263Right-handed 310
Helix 14
AB5
A
265 272Right-handed alpha
Helix 15
AB6
A
291 302Right-handed alpha
Helix 16
AB7
A
310 316Right-handed alpha
Helix 17
AB8
A
320 341Right-handed alpha
Helix 18
AB9
B
9 13Right-handed 310
Helix 19
AC1
B
19 23Right-handed 310
Helix 20
AC2
B
24 44Right-handed alpha
Helix 21
AC3
B
64 78Right-handed alpha
Helix 22
AC4
B
97 109Right-handed alpha
Helix 23
AC5
B
118 130Right-handed alpha
Helix 24
AC6
B
142 157Right-handed alpha
Helix 25
AC7
B
161 164Right-handed 310
Helix 26
AC8
B
175 189Right-handed alpha
Helix 27
AC9
B
197 201Right-handed 310
Helix 28
AD1
B
203 217Right-handed alpha
Helix 29
AD2
B
226 232Right-handed alpha
Helix 30
AD3
B
251 260Right-handed alpha
Helix 31
AD4
B
261 263Right-handed 310
Helix 32
AD5
B
265 271Right-handed alpha
Helix 33
AD6
B
291 302Right-handed alpha
Helix 34
AD7
B
310 316Right-handed alpha
Helix 35
AD8
B
320 341Right-handed alpha
Helix 36
AD9
C
19 23Right-handed 310
Helix 37
AE1
C
24 44Right-handed alpha
Helix 38
AE2
C
64 78Right-handed alpha
Helix 39
AE3
C
97 109Right-handed alpha
Helix 40
AE4
C
118 130Right-handed alpha
Helix 41
AE5
C
142 157Right-handed alpha
Helix 42
AE6
C
161 164Right-handed 310
Helix 43
AE7
C
175 189Right-handed alpha
Helix 44
AE8
C
197 201Right-handed 310
Helix 45
AE9
C
203 216Right-handed alpha
Helix 46
AF1
C
226 231Right-handed alpha
Helix 47
AF2
C
248 260Right-handed alpha
Helix 48
AF3
C
261 263Right-handed 310
Helix 49
AF4
C
265 271Right-handed alpha
Helix 50
AF5
C
291 302Right-handed alpha
Helix 51
AF6
C
310 315Right-handed alpha
Helix 52
AF7
C
320 341Right-handed alpha
Helix 53
AF8
D
19 23Right-handed 310
Helix 54
AF9
D
24 45Right-handed alpha
Helix 55
AG1
D
64 78Right-handed alpha
Helix 56
AG2
D
97 109Right-handed alpha
Helix 57
AG3
D
118 130Right-handed alpha
Helix 58
AG4
D
142 157Right-handed alpha
Helix 59
AG5
D
161 164Right-handed 310
Helix 60
AG6
D
175 189Right-handed alpha
Helix 61
AG7
D
197 201Right-handed 310
Helix 62
AG8
D
203 217Right-handed alpha
Helix 63
AG9
D
226 231Right-handed alpha
Helix 64
AH1
D
248 250Right-handed 310
Helix 65
AH2
D
251 260Right-handed alpha
Helix 66
AH3
D
261 263Right-handed 310
Helix 67
AH4
D
265 272Right-handed alpha
Helix 68
AH5
D
291 301Right-handed alpha
Helix 69
AH6
D
310 315Right-handed alpha
Helix 70
AH7
D
320 341Right-handed alpha
Helix 71
AH8
E
8 13Right-handed 310
Helix 72
AH9
E
19 23Right-handed 310
Helix 73
AI1
E
24 44Right-handed alpha
Helix 74
AI2
E
64 79Right-handed alpha
Helix 75
AI3
E
97 107Right-handed alpha
Helix 76
AI4
E
118 129Right-handed alpha
Helix 77
AI5
E
142 157Right-handed alpha
Helix 78
AI6
E
161 164Right-handed 310
Helix 79
AI7
E
175 189Right-handed alpha
Helix 80
AI8
E
197 201Right-handed 310
Helix 81
AI9
E
203 217Right-handed alpha
Helix 82
AJ1
E
226 232Right-handed alpha
Helix 83
AJ2
E
251 260Right-handed alpha
Helix 84
AJ3
E
261 263Right-handed 310
Helix 85
AJ4
E
265 273Right-handed alpha
Helix 86
AJ5
E
291 301Right-handed alpha
Helix 87
AJ6
E
310 315Right-handed alpha
Helix 88
AJ7
E
320 341Right-handed alpha
Helix 89
AJ8
F
19 23Right-handed 310
Helix 90
AJ9
F
24 44Right-handed alpha
Helix 91
AK1
F
64 78Right-handed alpha
Helix 92
AK2
F
97 109Right-handed alpha
Helix 93
AK3
F
118 130Right-handed alpha
Helix 94
AK4
F
142 157Right-handed alpha
Helix 95
AK5
F
161 164Right-handed 310
Helix 96
AK6
F
175 189Right-handed alpha
Helix 97
AK7
F
197 201Right-handed 310
Helix 98
AK8
F
203 217Right-handed alpha
Helix 99
AK9
F
226 232Right-handed alpha
Helix 100
AL1
F
251 260Right-handed alpha
Helix 101
AL2
F
261 263Right-handed 310
Helix 102
AL3
F
265 271Right-handed alpha
Helix 103
AL4
F
291 302Right-handed alpha
Helix 104
AL5
F
310 316Right-handed alpha
Helix 105
AL6
F
320 341Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 7TMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
55 60parallel
Strand 3
A
111 115parallel
Strand 4
A
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
191 195parallel
Strand 3
A
166 170parallel
Strand 4
A
236 239parallel
Strand 5
A
278 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
55 60parallel
Strand 3
B
111 115parallel
Strand 4
B
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 224first strand
Strand 2
B
191 195parallel
Strand 3
B
166 170parallel
Strand 4
B
236 239parallel
Strand 5
B
278 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 85first strand
Strand 2
C
55 60parallel
Strand 3
C
111 115parallel
Strand 4
C
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 224first strand
Strand 2
C
191 195parallel
Strand 3
C
166 170parallel
Strand 4
C
236 239parallel
Strand 5
C
278 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 85first strand
Strand 2
D
55 60parallel
Strand 3
D
111 115parallel
Strand 4
D
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 224first strand
Strand 2
D
191 195parallel
Strand 3
D
166 170parallel
Strand 4
D
236 239parallel
Strand 5
D
278 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 85first strand
Strand 2
E
55 60parallel
Strand 3
E
111 115parallel
Strand 4
E
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
220 224first strand
Strand 2
E
191 195parallel
Strand 3
E
166 170parallel
Strand 4
E
236 239parallel
Strand 5
E
278 281parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
81 85first strand
Strand 2
F
55 60parallel
Strand 3
F
111 115parallel
Strand 4
F
133 137parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
220 224first strand
Strand 2
F
191 195parallel
Strand 3
F
166 170parallel
Strand 4
F
236 239parallel
Strand 5
F
278 281parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il