Analysis of interatomic Contacts of Structural Units in PDB entry:
7TNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TNP entry

There are 4 chains in PDB entry 7TNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 394	THR 1208
B	THR 394	GLY 1209
C	THR 394	THR 1208
D	THR 394	GLY 1209

There are 86 helices in PDB entry 7TNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	416	419	Right-handed 310
Helix 2	AA2	A	423	437	Right-handed alpha
Helix 3	AA3	A	462	469	Right-handed alpha
Helix 4	AA4	A	482	487	Right-handed alpha
Helix 5	AA5	A	515	519	Right-handed 310
Helix 6	AA6	A	522	545	Right-handed alpha
Helix 7	AA7	A	572	585	Right-handed alpha
Helix 8	AA8	A	595	624	Right-handed alpha
Helix 9	AA9	A	653	660	Right-handed alpha
Helix 10	AB1	A	664	676	Right-handed alpha
Helix 11	AB2	A	685	697	Right-handed alpha
Helix 12	AB3	A	706	714	Right-handed alpha
Helix 13	AB4	A	742	756	Right-handed alpha
Helix 14	AB5	A	757	769	Right-handed alpha
Helix 15	AB6	A	793	822	Right-handed alpha
Helix 16	AB7	A	1006	1028	Right-handed alpha
Helix 17	AB8	A	1091	1103	Right-handed alpha
Helix 18	AB9	A	1104	1123	Right-handed alpha
Helix 19	AC1	A	1132	1160	Right-handed alpha
Helix 20	AC2	A	1178	1206	Right-handed alpha
Helix 21	AC3	B	423	437	Right-handed alpha
Helix 22	AC4	B	461	469	Right-handed alpha
Helix 23	AC5	B	482	488	Right-handed alpha
Helix 24	AC6	B	515	519	Right-handed 310
Helix 25	AC7	B	522	544	Right-handed alpha
Helix 26	AC8	B	564	568	Right-handed 310
Helix 27	AC9	B	572	585	Right-handed alpha
Helix 28	AD1	B	598	617	Right-handed alpha
Helix 29	AD2	B	619	624	Right-handed alpha
Helix 30	AD3	B	636	641	Right-handed alpha
Helix 31	AD4	B	653	661	Right-handed alpha
Helix 32	AD5	B	664	676	Right-handed alpha
Helix 33	AD6	B	685	697	Right-handed alpha
Helix 34	AD7	B	706	715	Right-handed alpha
Helix 35	AD8	B	742	755	Right-handed alpha
Helix 36	AD9	B	757	770	Right-handed alpha
Helix 37	AE1	B	793	820	Right-handed alpha
Helix 38	AE2	B	1004	1028	Right-handed alpha
Helix 39	AE3	B	1084	1089	Right-handed 310
Helix 40	AE4	B	1091	1103	Right-handed alpha
Helix 41	AE5	B	1104	1121	Right-handed alpha
Helix 42	AE6	B	1132	1160	Right-handed alpha
Helix 43	AE7	B	1178	1209	Right-handed alpha
Helix 44	AE8	C	416	419	Right-handed 310
Helix 45	AE9	C	423	437	Right-handed alpha
Helix 46	AF1	C	462	469	Right-handed alpha
Helix 47	AF2	C	482	487	Right-handed alpha
Helix 48	AF3	C	515	519	Right-handed 310
Helix 49	AF4	C	522	545	Right-handed alpha
Helix 50	AF5	C	572	585	Right-handed alpha
Helix 51	AF6	C	595	624	Right-handed alpha
Helix 52	AF7	C	653	660	Right-handed alpha
Helix 53	AF8	C	664	676	Right-handed alpha
Helix 54	AF9	C	685	697	Right-handed alpha
Helix 55	AG1	C	706	714	Right-handed alpha
Helix 56	AG2	C	742	756	Right-handed alpha
Helix 57	AG3	C	757	769	Right-handed alpha
Helix 58	AG4	C	793	822	Right-handed alpha
Helix 59	AG5	C	1006	1028	Right-handed alpha
Helix 60	AG6	C	1091	1103	Right-handed alpha
Helix 61	AG7	C	1104	1123	Right-handed alpha
Helix 62	AG8	C	1132	1160	Right-handed alpha
Helix 63	AG9	C	1178	1206	Right-handed alpha
Helix 64	AH1	D	423	437	Right-handed alpha
Helix 65	AH2	D	461	469	Right-handed alpha
Helix 66	AH3	D	482	488	Right-handed alpha
Helix 67	AH4	D	515	519	Right-handed 310
Helix 68	AH5	D	522	544	Right-handed alpha
Helix 69	AH6	D	564	568	Right-handed 310
Helix 70	AH7	D	572	585	Right-handed alpha
Helix 71	AH8	D	598	617	Right-handed alpha
Helix 72	AH9	D	619	624	Right-handed alpha
Helix 73	AI1	D	636	641	Right-handed alpha
Helix 74	AI2	D	653	661	Right-handed alpha
Helix 75	AI3	D	664	676	Right-handed alpha
Helix 76	AI4	D	685	697	Right-handed alpha
Helix 77	AI5	D	706	715	Right-handed alpha
Helix 78	AI6	D	742	755	Right-handed alpha
Helix 79	AI7	D	757	770	Right-handed alpha
Helix 80	AI8	D	793	820	Right-handed alpha
Helix 81	AI9	D	1004	1028	Right-handed alpha
Helix 82	AJ1	D	1084	1089	Right-handed 310
Helix 83	AJ2	D	1091	1103	Right-handed alpha
Helix 84	AJ3	D	1104	1121	Right-handed alpha
Helix 85	AJ4	D	1132	1160	Right-handed alpha
Helix 86	AJ5	D	1178	1209	Right-handed alpha

There are 22 sheets in PDB entry 7TNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	395	398	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	736	anti-parallel
Strand 5	A	490	491	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	395	398	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	736	anti-parallel
Strand 5	A	497	498	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	504	anti-parallel
Strand 4	A	721	723	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1057	1060	anti-parallel
Strand 3	A	1064	1067	anti-parallel
Strand 4	A	1076	1078	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	498	first strand
Strand 2	B	730	737	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	500	505	anti-parallel
Strand 3	B	720	723	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	628	629	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	650	first strand
Strand 2	B	682	683	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1065	1067	anti-parallel
Strand 3	B	1057	1060	anti-parallel
Strand 4	B	1033	1036	anti-parallel
Strand 5	B	1174	1175	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	395	398	parallel
Strand 3	C	474	480	parallel
Strand 4	C	730	736	anti-parallel
Strand 5	C	490	491	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	395	398	parallel
Strand 3	C	474	480	parallel
Strand 4	C	730	736	anti-parallel
Strand 5	C	497	498	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	504	anti-parallel
Strand 4	C	721	723	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1036	first strand
Strand 2	C	1057	1060	anti-parallel
Strand 3	C	1064	1067	anti-parallel
Strand 4	C	1076	1078	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	498	first strand
Strand 2	D	730	737	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	705	first strand
Strand 2	D	500	505	anti-parallel
Strand 3	D	720	723	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	510	first strand
Strand 2	D	628	629	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	682	683	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1077	first strand
Strand 2	D	1065	1067	anti-parallel
Strand 3	D	1057	1060	anti-parallel
Strand 4	D	1033	1036	anti-parallel
Strand 5	D	1174	1175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TNP