Analysis of interatomic Contacts of Structural Units in PDB entry:
7TNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TNV entry

There is 1 chain in PDB entry 7TNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32PHE 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7TNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 134Right-handed alpha
Helix 2
AA2
A
183 196Right-handed alpha
Helix 3
AA3
A
212 216Right-handed 310
Helix 4
AA4
A
218 229Right-handed alpha
Helix 5
AA5
A
254 262Right-handed alpha
Helix 6
AA6
A
264 268Right-handed 310
Helix 7
AA7
A
276 284Right-handed alpha
Helix 8
AA8
A
284 292Right-handed alpha
Helix 9
AA9
A
294 296Right-handed 310
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There are 3 sheets in PDB entry 7TNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 94first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
139 146anti-parallel
Strand 4
A
43 52anti-parallel
Strand 5
A
57 63anti-parallel
Strand 6
A
105 111anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
168 171anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
233 239parallel
Strand 3
A
203 210parallel
Strand 4
A
174 180parallel
Strand 5
A
270 274parallel
Strand 6
A
298 300parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il