Analysis of interatomic Contacts of Structural Units in PDB entry:
7TNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TNY entry

There are 3 chains in PDB entry 7TNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 241GLU 922
B
 G 2 G 12
C
 C 13 C 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7TNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 250Right-handed alpha
Helix 2
AA2
A
251 257Right-handed alpha
Helix 3
AA3
A
267 284Right-handed alpha
Helix 4
AA4
A
299 314Right-handed alpha
Helix 5
AA5
A
333 339Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 366Right-handed 310
Helix 8
AA8
A
373 377Right-handed 310
Helix 9
AA9
A
381 396Right-handed alpha
Helix 10
AB1
A
419 435Right-handed alpha
Helix 11
AB2
A
445 452Right-handed alpha
Helix 12
AB3
A
469 488Right-handed alpha
Helix 13
AB4
A
506 521Right-handed alpha
Helix 14
AB5
A
530 558Right-handed alpha
Helix 15
AB6
A
559 575Right-handed alpha
Helix 16
AB7
A
580 603Right-handed alpha
Helix 17
AB8
A
604 607Right-handed 310
Helix 18
AB9
A
608 625Right-handed alpha
Helix 19
AC1
A
637 649Right-handed alpha
Helix 20
AC2
A
674 684Right-handed alpha
Helix 21
AC3
A
744 769Right-handed alpha
Helix 22
AC4
A
772 794Right-handed alpha
Helix 23
AC5
A
889 892Right-handed 310
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There are 5 sheets in PDB entry 7TNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
343 346parallel
Strand 3
A
293 296parallel
Strand 4
A
368 371parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
737 741parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
807 809anti-parallel
Strand 3
A
893 895anti-parallel
Strand 4
A
902 903anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 833first strand
Strand 2
A
823 825anti-parallel
Strand 3
A
916 917parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
858 864anti-parallel
Strand 3
A
872 878anti-parallel
Strand 4
A
883 887anti-parallel
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