Analysis of interatomic Contacts of Structural Units in PDB entry:
7TOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TOF entry

There are 2 chains in PDB entry 7TOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 27GLU 504
B
 HIS 27GLU 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 7TOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 47Right-handed alpha
Helix 2
AA2
A
48 58Right-handed alpha
Helix 3
AA3
A
76 89Right-handed alpha
Helix 4
AA4
A
91 93Right-handed 310
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
114 127Right-handed alpha
Helix 7
AA7
A
143 145Right-handed 310
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
176 191Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
206 217Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
253 259Right-handed alpha
Helix 14
AB5
A
262 273Right-handed alpha
Helix 15
AB6
A
280 294Right-handed alpha
Helix 16
AB7
A
299 301Right-handed 310
Helix 17
AB8
A
316 320Right-handed 310
Helix 18
AB9
A
435 447Right-handed alpha
Helix 19
AC1
A
454 476Right-handed alpha
Helix 20
AC2
A
489 500Right-handed alpha
Helix 21
AC3
B
41 47Right-handed alpha
Helix 22
AC4
B
47 58Right-handed alpha
Helix 23
AC5
B
76 85Right-handed alpha
Helix 24
AC6
B
86 88Right-handed 310
Helix 25
AC7
B
91 93Right-handed 310
Helix 26
AC8
B
94 103Right-handed alpha
Helix 27
AC9
B
114 127Right-handed alpha
Helix 28
AD1
B
143 145Right-handed 310
Helix 29
AD2
B
146 158Right-handed alpha
Helix 30
AD3
B
176 191Right-handed alpha
Helix 31
AD4
B
192 194Right-handed 310
Helix 32
AD5
B
206 217Right-handed alpha
Helix 33
AD6
B
254 259Right-handed alpha
Helix 34
AD7
B
262 273Right-handed alpha
Helix 35
AD8
B
280 294Right-handed alpha
Helix 36
AD9
B
299 301Right-handed 310
Helix 37
AE1
B
316 320Right-handed 310
Helix 38
AE2
B
435 447Right-handed alpha
Helix 39
AE3
B
454 476Right-handed alpha
Helix 40
AE4
B
489 500Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7TOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
65 71parallel
Strand 3
A
32 37parallel
Strand 4
A
135 140parallel
Strand 5
A
165 169parallel
Strand 6
A
196 198parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
399 402anti-parallel
Strand 3
A
390 393anti-parallel
Strand 4
A
366 373anti-parallel
Strand 5
A
230 238anti-parallel
Strand 6
A
354 359parallel
Strand 7
A
337 342anti-parallel
Strand 8
A
303 309anti-parallel
Strand 9
A
480 483parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
415 417anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
65 71parallel
Strand 3
B
32 37parallel
Strand 4
B
135 140parallel
Strand 5
B
165 169parallel
Strand 6
B
196 198parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
399 402anti-parallel
Strand 3
B
389 395anti-parallel
Strand 4
B
366 373anti-parallel
Strand 5
B
230 238anti-parallel
Strand 6
B
354 359parallel
Strand 7
B
337 342anti-parallel
Strand 8
B
303 309anti-parallel
Strand 9
B
480 483parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 407first strand
Strand 2
B
415 417anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il