Analysis of interatomic Contacts of Structural Units in PDB entry:
7TOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TOI entry

There is 1 chain in PDB entry 7TOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7TOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
81 85Right-handed 310
Helix 3
AA3
A
187 192Right-handed alpha
Helix 4
AA4
A
202 214Right-handed alpha
Helix 5
AA5
A
215 218Right-handed 310
Helix 6
AA6
A
240 249Right-handed alpha
Helix 7
AA7
A
263 269Right-handed alpha
Helix 8
AA8
A
272 297Right-handed alpha
Helix 9
AA9
A
316 333Right-handed alpha
Helix 10
AB1
A
341 346Right-handed alpha
Helix 11
AB2
A
357 360Right-handed 310
Helix 12
AB3
A
368 378Right-handed alpha
Helix 13
AB4
A
379 384Right-handed 310
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There are 7 sheets in PDB entry 7TOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
168 175anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
103 105anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
168 175anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
109 113anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
165 166anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
64 73anti-parallel
Strand 3
A
96 98anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
64 73anti-parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
36 43anti-parallel
Strand 5
A
142 146anti-parallel
Strand 6
A
160 162anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
180 186parallel
Strand 3
A
255 261parallel
Strand 4
A
300 304parallel
Strand 5
A
338 340parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
351 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il