Analysis of interatomic Contacts of Structural Units in PDB entry:
7TOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TOJ entry

There is 1 chain in PDB entry 7TOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7TOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
188 193Right-handed alpha
Helix 4
AA4
A
203 214Right-handed alpha
Helix 5
AA5
A
215 219Right-handed 310
Helix 6
AA6
A
241 251Right-handed alpha
Helix 7
AA7
A
264 270Right-handed alpha
Helix 8
AA8
A
273 298Right-handed alpha
Helix 9
AA9
A
318 334Right-handed alpha
Helix 10
AB1
A
342 348Right-handed alpha
Helix 11
AB2
A
368 379Right-handed alpha
Helix 12
AB3
A
380 385Right-handed 310
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There are 6 sheets in PDB entry 7TOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
50 58anti-parallel
Strand 4
A
105 107anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
50 58anti-parallel
Strand 4
A
111 115anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
135 137anti-parallel
Strand 3
A
166 167anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
98 100anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
120 127anti-parallel
Strand 4
A
38 45anti-parallel
Strand 5
A
144 148anti-parallel
Strand 6
A
161 163anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 227first strand
Strand 2
A
181 187parallel
Strand 3
A
256 262parallel
Strand 4
A
301 305parallel
Strand 5
A
339 341parallel
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