Analysis of interatomic Contacts of Structural Units in PDB entry:
7TOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TOM entry

There is 1 chain in PDB entry 7TOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ASP 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7TOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
119 132Right-handed alpha
Helix 3
AA3
A
146 150Right-handed 310
Helix 4
AA4
A
152 163Right-handed alpha
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
179 190Right-handed alpha
Helix 7
AA7
A
202 211Right-handed alpha
Helix 8
AA8
A
214 229Right-handed alpha
Helix 9
AA9
A
244 246Right-handed 310
Helix 10
AB1
A
247 258Right-handed alpha
Helix 11
AB2
A
277 284Right-handed alpha
Helix 12
AB3
A
287 299Right-handed alpha
Helix 13
AB4
A
304 308Right-handed 310
Helix 14
AB5
A
314 326Right-handed alpha
Helix 15
AB6
A
355 359Right-handed alpha
Helix 16
AB7
A
360 374Right-handed alpha
Helix 17
AB8
A
384 397Right-handed alpha
Helix 18
AB9
A
407 420Right-handed alpha
Helix 19
AC1
A
422 433Right-handed alpha
Helix 20
AC2
A
448 453Right-handed alpha
Helix 21
AC3
A
469 476Right-handed alpha
Helix 22
AC4
A
476 484Right-handed alpha
Helix 23
AC5
A
488 495Right-handed alpha
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There are 4 sheets in PDB entry 7TOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 8first strand
Strand 2
A
15 23anti-parallel
Strand 3
A
26 33anti-parallel
Strand 4
A
37 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
262 269parallel
Strand 3
A
434 439parallel
Strand 4
A
339 346anti-parallel
Strand 5
A
352 354anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
339 346anti-parallel
Strand 3
A
434 439anti-parallel
Strand 4
A
262 269parallel
Strand 5
A
233 236parallel
Strand 6
A
193 197parallel
Strand 7
A
167 172parallel
Strand 8
A
139 143parallel
Strand 9
A
89 93parallel
Strand 10
A
457 460parallel
Strand 11
A
466 468anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
485 487anti-parallel
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