Analysis of interatomic Contacts of Structural Units in PDB entry:
7TOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TOT entry

There are 2 chains in PDB entry 7TOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 0GLU 282
B
 LYS 0GLU 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7TOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 20Right-handed alpha
Helix 2
AA2
A
34 48Right-handed alpha
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
94 99Right-handed alpha
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
116 121Right-handed alpha
Helix 8
AA8
A
123 140Right-handed alpha
Helix 9
AA9
A
150 165Right-handed alpha
Helix 10
AB1
A
185 191Right-handed 310
Helix 11
AB2
A
192 199Right-handed alpha
Helix 12
AB3
A
200 215Right-handed alpha
Helix 13
AB4
A
219 233Right-handed alpha
Helix 14
AB5
B
6 20Right-handed alpha
Helix 15
AB6
B
34 48Right-handed alpha
Helix 16
AB7
B
58 62Right-handed 310
Helix 17
AB8
B
67 71Right-handed 310
Helix 18
AB9
B
74 85Right-handed alpha
Helix 19
AC1
B
94 99Right-handed alpha
Helix 20
AC2
B
111 115Right-handed 310
Helix 21
AC3
B
116 121Right-handed alpha
Helix 22
AC4
B
123 140Right-handed alpha
Helix 23
AC5
B
150 165Right-handed alpha
Helix 24
AC6
B
185 191Right-handed 310
Helix 25
AC7
B
192 199Right-handed alpha
Helix 26
AC8
B
200 215Right-handed alpha
Helix 27
AC9
B
219 234Right-handed alpha
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There are 5 sheets in PDB entry 7TOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
89 91parallel
Strand 3
A
50 55parallel
Strand 4
A
24 29parallel
Strand 5
A
143 147parallel
Strand 6
A
169 173parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
B
105 109anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 246first strand
Strand 2
A
261 269anti-parallel
Strand 3
A
272 280anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
89 91parallel
Strand 3
B
50 55parallel
Strand 4
B
24 29parallel
Strand 5
B
143 147parallel
Strand 6
B
169 173parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 246first strand
Strand 2
B
261 269anti-parallel
Strand 3
B
272 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il