Analysis of interatomic Contacts of Structural Units in PDB entry:
7TPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TPP entry

There are 5 chains in PDB entry 7TPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ALA 1	GLU 579
A	ALA 1	ARG 139
C	ALA 1	ARG 709
D	ILE 1556	TYR 2196
B	ILE 195	LYS 448

There are 27 helices in PDB entry 7TPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	39	44	Right-handed alpha
Helix 2	AA2	E	104	108	Right-handed 310
Helix 3	AA3	E	172	176	Right-handed alpha
Helix 4	AA4	E	282	287	Right-handed alpha
Helix 5	AA5	E	463	467	Right-handed 310
Helix 6	AA6	E	490	494	Right-handed 310
Helix 7	AA7	E	567	572	Right-handed alpha
Helix 8	AA8	E	573	578	Right-handed 310
Helix 9	AA9	A	3	11	Right-handed alpha
Helix 10	AB1	A	25	32	Right-handed alpha
Helix 11	AB2	A	34	43	Right-handed alpha
Helix 12	AB3	A	90	96	Right-handed 310
Helix 13	AB4	C	92	96	Right-handed 310
Helix 14	AB5	C	105	112	Right-handed 310
Helix 15	AB6	C	127	131	Right-handed 310
Helix 16	AB7	C	151	156	Right-handed alpha
Helix 17	AB8	C	249	253	Right-handed 310
Helix 18	AB9	C	344	349	Right-handed alpha
Helix 19	AC1	C	354	358	Right-handed 310
Helix 20	AC2	C	460	464	Right-handed 310
Helix 21	AC3	C	484	489	Right-handed alpha
Helix 22	AC4	C	529	534	Right-handed 310
Helix 23	AC5	C	549	557	Right-handed alpha
Helix 24	AC6	D	1566	1571	Right-handed 310
Helix 25	AC7	B	305	310	Right-handed 310
Helix 26	AC8	B	346	350	Right-handed 310
Helix 27	AC9	B	418	425	Right-handed alpha

There are 29 sheets in PDB entry 7TPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	349	first strand
Strand 2	E	336	339	anti-parallel
Strand 3	E	380	383	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	361	first strand
Strand 2	E	420	425	anti-parallel
Strand 3	E	401	405	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	505	506	first strand
Strand 2	E	560	561	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	533	first strand
Strand 2	E	538	544	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	7	13	anti-parallel
Strand 3	C	73	76	parallel
Strand 4	C	118	121	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	160	165	parallel
Strand 3	C	139	144	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	124	125	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	294	298	parallel
Strand 3	C	276	280	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	229	first strand
Strand 2	C	266	271	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	257	258	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	405	409	parallel
Strand 3	C	452	455	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	475	first strand
Strand 2	C	495	497	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	516	first strand
Strand 2	C	581	584	parallel
Strand 3	C	621	623	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	558	560	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	596	first strand
Strand 2	C	613	615	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1557	1559	first strand
Strand 2	D	1591	1593	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1563	1564	first strand
Strand 2	D	1586	1587	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1632	1633	first strand
Strand 2	D	1677	1678	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1643	1644	first strand
Strand 2	D	1697	1703	anti-parallel
Strand 3	D	1719	1723	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1741	1744	first strand
Strand 2	D	1799	1803	parallel
Strand 3	D	1841	1845	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1791	1793	first strand
Strand 2	D	1873	1875	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1834	1835	first strand
Strand 2	D	1813	1816	anti-parallel
Strand 3	D	1856	1857	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1896	1897	first strand
Strand 2	D	1935	1950	anti-parallel
Strand 3	D	2000	2016	anti-parallel
Strand 4	D	1966	1968	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2097	2098	first strand
Strand 2	D	2172	2177	anti-parallel
Strand 3	D	2124	2129	anti-parallel
Strand 4	D	2137	2138	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2097	2098	first strand
Strand 2	D	2172	2177	anti-parallel
Strand 3	D	2124	2129	anti-parallel
Strand 4	D	2150	2151	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2107	2109	first strand
Strand 2	D	2189	2191	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	211	213	anti-parallel
Strand 3	B	245	247	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	265	268	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	392	396	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TPP