Analysis of interatomic Contacts of Structural Units in PDB entry:
7TPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TPS entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7TPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 35ALA 140
B
 PHE 19ILE 126
B
 VAL 128PRO 227
C
 ILE 36ALA 140
D
 PHE 19PRO 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7TPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
107 111Right-handed 310
Helix 3
AA3
B
49 52Right-handed 310
Helix 4
AA4
B
78 82Right-handed 310
Helix 5
AA5
B
88 93Right-handed alpha
Helix 6
AA6
B
105 109Right-handed 310
Helix 7
AA7
C
107 111Right-handed 310
Helix 8
AA8
D
49 52Right-handed 310
Helix 9
AA9
D
78 82Right-handed 310
Helix 10
AB1
D
105 109Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 7TPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
126 139parallel
Strand 3
A
112 121anti-parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
71 77anti-parallel
Strand 6
A
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
100 103anti-parallel
Strand 3
A
91 94anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
121 131parallel
Strand 3
B
110 117anti-parallel
Strand 4
B
54 59anti-parallel
Strand 5
B
62 68anti-parallel
Strand 6
B
71 73anti-parallel
Strand 7
D
71 73anti-parallel
Strand 8
D
62 68anti-parallel
Strand 9
D
54 59anti-parallel
Strand 10
D
110 117anti-parallel
Strand 11
D
121 130anti-parallel
Strand 12
D
27 30parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
96 101anti-parallel
Strand 3
B
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 145first strand
Strand 2
B
150 159anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
164 168anti-parallel
Strand 3
B
206 213anti-parallel
Strand 4
B
218 225anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
128 139parallel
Strand 3
C
112 119anti-parallel
Strand 4
C
63 68anti-parallel
Strand 5
C
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
100 103anti-parallel
Strand 3
C
91 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
96 101anti-parallel
Strand 3
D
85 88anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 145first strand
Strand 2
D
150 159anti-parallel
Strand 3
D
191 200anti-parallel
Strand 4
D
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 175first strand
Strand 2
D
163 168anti-parallel
Strand 3
D
206 213anti-parallel
Strand 4
D
218 225anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il