Analysis of interatomic Contacts of Structural Units in PDB entry:
7TQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TQD entry

There are 3 chains in PDB entry 7TQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 375TYR 600
B
 GLN 7GLU 596
C
 GLU 2ALA 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7TQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
387 401Right-handed alpha
Helix 2
AA2
A
415 421Right-handed 310
Helix 3
AA3
A
424 428Right-handed 310
Helix 4
AA4
A
431 442Right-handed alpha
Helix 5
AA5
A
460 468Right-handed alpha
Helix 6
AA6
A
479 489Right-handed alpha
Helix 7
AA7
A
504 506Right-handed 310
Helix 8
AA8
A
520 531Right-handed alpha
Helix 9
AA9
A
556 577Right-handed alpha
Helix 10
AB1
B
9 22Right-handed alpha
Helix 11
AB2
B
118 123Right-handed alpha
Helix 12
AB3
B
128 150Right-handed alpha
Helix 13
AB4
B
178 180Right-handed 310
Helix 14
AB5
B
181 187Right-handed alpha
Helix 15
AB6
B
226 231Right-handed alpha
Helix 16
AB7
B
257 269Right-handed alpha
Helix 17
AB8
B
271 286Right-handed alpha
Helix 18
AB9
B
362 366Right-handed 310
Helix 19
AC1
B
373 378Right-handed alpha
Helix 20
AC2
B
387 401Right-handed alpha
Helix 21
AC3
B
432 442Right-handed alpha
Helix 22
AC4
B
460 469Right-handed alpha
Helix 23
AC5
B
479 489Right-handed alpha
Helix 24
AC6
B
504 506Right-handed 310
Helix 25
AC7
B
520 530Right-handed alpha
Helix 26
AC8
B
556 577Right-handed alpha
Helix 27
AC9
C
3 14Right-handed alpha
Helix 28
AD1
C
17 38Right-handed alpha
Helix 29
AD2
C
52 56Right-handed alpha
Helix 30
AD3
C
84 91Right-handed alpha
Helix 31
AD4
C
92 100Right-handed alpha
Helix 32
AD5
C
131 142Right-handed alpha
Helix 33
AD6
C
206 221Right-handed alpha
Helix 34
AD7
C
224 239Right-handed alpha
Helix 35
AD8
C
249 260Right-handed alpha
Helix 36
AD9
C
266 282Right-handed alpha
Helix 37
AE1
C
282 288Right-handed alpha
Helix 38
AE2
C
303 307Right-handed 310
Helix 39
AE3
C
309 333Right-handed alpha
Helix 40
AE4
C
335 348Right-handed alpha
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There are 7 sheets in PDB entry 7TQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 452first strand
Strand 2
A
404 408parallel
Strand 3
A
381 384parallel
Strand 4
A
472 475parallel
Strand 5
A
495 502parallel
Strand 6
A
508 516anti-parallel
Strand 7
A
581 587anti-parallel
Strand 8
A
593 597anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
39 45anti-parallel
Strand 3
B
32 33anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
39 45anti-parallel
Strand 3
B
59 67anti-parallel
Strand 4
B
72 78anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
206 212anti-parallel
Strand 3
B
192 199anti-parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
294 301parallel
Strand 6
B
311 318anti-parallel
Strand 7
B
354 360anti-parallel
Strand 8
B
167 175parallel
Strand 9
B
206 212parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 452first strand
Strand 2
B
404 408parallel
Strand 3
B
381 384parallel
Strand 4
B
472 475parallel
Strand 5
B
495 502parallel
Strand 6
B
508 516anti-parallel
Strand 7
B
581 587anti-parallel
Strand 8
B
593 596anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 51first strand
Strand 2
C
69 76anti-parallel
Strand 3
C
119 126parallel
Strand 4
C
110 114anti-parallel
Strand 5
C
104 107anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 195first strand
Strand 2
C
202 205anti-parallel
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