Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TRD entry

There are 3 chains in PDB entry 7TRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 33 C 321
A
 CYS 7ASP 1132
N
 T 12 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7TRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
76 92Right-handed alpha
Helix 5
AA5
A
125 134Right-handed alpha
Helix 6
AA6
A
134 145Right-handed alpha
Helix 7
AA7
A
146 156Right-handed alpha
Helix 8
AA8
A
174 178Right-handed 310
Helix 9
AA9
A
329 332Right-handed 310
Helix 10
AB1
A
345 350Right-handed alpha
Helix 11
AB2
A
353 366Right-handed alpha
Helix 12
AB3
A
383 388Right-handed alpha
Helix 13
AB4
A
389 401Right-handed alpha
Helix 14
AB5
A
404 413Right-handed alpha
Helix 15
AB6
A
446 454Right-handed alpha
Helix 16
AB7
A
457 471Right-handed alpha
Helix 17
AB8
A
474 479Right-handed alpha
Helix 18
AB9
A
480 496Right-handed alpha
Helix 19
AC1
A
505 509Right-handed alpha
Helix 20
AC2
A
517 521Right-handed 310
Helix 21
AC3
A
530 560Right-handed alpha
Helix 22
AC4
A
578 596Right-handed alpha
Helix 23
AC5
A
602 612Right-handed alpha
Helix 24
AC6
A
652 672Right-handed alpha
Helix 25
AC7
A
673 677Right-handed 310
Helix 26
AC8
A
682 698Right-handed alpha
Helix 27
AC9
A
721 733Right-handed alpha
Helix 28
AD1
A
765 769Right-handed 310
Helix 29
AD2
A
772 784Right-handed alpha
Helix 30
AD3
A
802 815Right-handed alpha
Helix 31
AD4
A
837 854Right-handed alpha
Helix 32
AD5
A
876 890Right-handed alpha
Helix 33
AD6
A
946 950Right-handed 310
Helix 34
AD7
A
954 958Right-handed 310
Helix 35
AD8
A
965 982Right-handed alpha
Helix 36
AD9
A
983 988Right-handed alpha
Helix 37
AE1
A
993 1017Right-handed alpha
Helix 38
AE2
A
1024 1027Right-handed 310
Helix 39
AE3
A
1028 1051Right-handed alpha
Helix 40
AE4
A
1066 1082Right-handed alpha
Helix 41
AE5
A
1085 1107Right-handed alpha
Helix 42
AE6
A
1108 1119Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7TRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 171anti-parallel
Strand 5
A
789 795parallel
Strand 6
A
738 749anti-parallel
Strand 7
A
755 764anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 171anti-parallel
Strand 5
A
789 795parallel
Strand 6
A
738 749anti-parallel
Strand 7
A
800 801anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
119 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
574 577anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
817 820anti-parallel
Strand 4
A
618 626parallel
Strand 5
A
629 636anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 865first strand
Strand 2
A
869 874anti-parallel
Strand 3
A
707 713anti-parallel
Strand 4
A
898 905anti-parallel
Strand 5
A
920 921parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il