Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TRE entry

There are 4 chains in PDB entry 7TRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 33 C 321
A
 CYS 7ASP 1132
D
 T 12 G 18
C
 SER 90HIS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7TRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
24 32Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
76 92Right-handed alpha
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
125 134Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
329 331Right-handed 310
Helix 11
AB2
A
353 366Right-handed alpha
Helix 12
AB3
A
383 388Right-handed alpha
Helix 13
AB4
A
389 402Right-handed alpha
Helix 14
AB5
A
404 413Right-handed alpha
Helix 15
AB6
A
446 453Right-handed alpha
Helix 16
AB7
A
457 470Right-handed alpha
Helix 17
AB8
A
474 479Right-handed alpha
Helix 18
AB9
A
480 496Right-handed alpha
Helix 19
AC1
A
505 509Right-handed alpha
Helix 20
AC2
A
517 521Right-handed 310
Helix 21
AC3
A
530 551Right-handed alpha
Helix 22
AC4
A
551 560Right-handed alpha
Helix 23
AC5
A
578 596Right-handed alpha
Helix 24
AC6
A
602 610Right-handed alpha
Helix 25
AC7
A
652 672Right-handed alpha
Helix 26
AC8
A
673 677Right-handed 310
Helix 27
AC9
A
682 699Right-handed alpha
Helix 28
AD1
A
721 733Right-handed alpha
Helix 29
AD2
A
772 784Right-handed alpha
Helix 30
AD3
A
802 814Right-handed alpha
Helix 31
AD4
A
837 854Right-handed alpha
Helix 32
AD5
A
856 860Right-handed 310
Helix 33
AD6
A
876 890Right-handed alpha
Helix 34
AD7
A
946 950Right-handed 310
Helix 35
AD8
A
954 958Right-handed 310
Helix 36
AD9
A
965 982Right-handed alpha
Helix 37
AE1
A
983 988Right-handed alpha
Helix 38
AE2
A
993 1017Right-handed alpha
Helix 39
AE3
A
1024 1027Right-handed 310
Helix 40
AE4
A
1028 1051Right-handed alpha
Helix 41
AE5
A
1066 1082Right-handed alpha
Helix 42
AE6
A
1085 1107Right-handed alpha
Helix 43
AE7
A
1108 1118Right-handed alpha
Helix 44
AE8
C
98 104Right-handed alpha
Helix 45
AE9
C
158 164Right-handed alpha
Helix 46
AF1
C
167 171Right-handed 310
Helix 47
AF2
C
223 226Right-handed 310
Helix 48
AF3
C
227 241Right-handed alpha
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There are 8 sheets in PDB entry 7TRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
166 171anti-parallel
Strand 5
A
789 801parallel
Strand 6
A
738 749anti-parallel
Strand 7
A
755 765anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
120 121anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
502 504anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 564first strand
Strand 2
A
574 577anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
816 820anti-parallel
Strand 4
A
617 626parallel
Strand 5
A
629 636anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 865first strand
Strand 2
A
869 874anti-parallel
Strand 3
A
707 713anti-parallel
Strand 4
A
898 905anti-parallel
Strand 5
A
920 921parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
942 944anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 120first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
152 157anti-parallel
Strand 4
C
204 215parallel
Strand 5
C
180 189anti-parallel
Strand 6
C
114 120anti-parallel
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