Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TRJ entry

There are 10 chains in PDB entry 7TRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 41	ASP 459
D	GLY 8	LEU 351
E	VAL 167	LYS 519
G	LYS 4	LEU 305
I	MET 1	CYS 334
B	PRO 41	ASP 459
C	GLY 8	LEU 351
F	VAL 167	LYS 519
H	LYS 4	LEU 305
J	MET 1	CYS 334

There are138 helices in PDB entry 7TRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	74	87	Right-handed alpha
Helix 4	AA4	A	98	109	Right-handed alpha
Helix 5	AA5	A	110	113	Right-handed 310
Helix 6	AA6	A	130	142	Right-handed alpha
Helix 7	AA7	A	161	175	Right-handed alpha
Helix 8	AA8	A	253	263	Right-handed alpha
Helix 9	AA9	A	268	279	Right-handed alpha
Helix 10	AB1	A	302	315	Right-handed alpha
Helix 11	AB2	A	339	341	Right-handed 310
Helix 12	AB3	D	9	25	Right-handed alpha
Helix 13	AB4	D	30	48	Right-handed alpha
Helix 14	AB5	D	53	72	Right-handed alpha
Helix 15	AB6	D	75	98	Right-handed alpha
Helix 16	AB7	D	109	113	Right-handed alpha
Helix 17	AB8	D	128	153	Right-handed alpha
Helix 18	AB9	D	171	180	Right-handed alpha
Helix 19	AC1	D	199	209	Right-handed alpha
Helix 20	AC2	D	221	226	Right-handed alpha
Helix 21	AC3	D	250	262	Right-handed alpha
Helix 22	AC4	D	270	274	Right-handed 310
Helix 23	AC5	D	300	305	Right-handed 310
Helix 24	AC6	D	317	321	Right-handed 310
Helix 25	AC7	D	332	334	Right-handed 310
Helix 26	AC8	D	335	344	Right-handed alpha
Helix 27	AC9	D	345	349	Right-handed 310
Helix 28	AD1	E	191	196	Right-handed 310
Helix 29	AD2	E	204	216	Right-handed alpha
Helix 30	AD3	E	221	240	Right-handed alpha
Helix 31	AD4	E	247	267	Right-handed alpha
Helix 32	AD5	E	270	286	Right-handed alpha
Helix 33	AD6	E	292	312	Right-handed alpha
Helix 34	AD7	E	312	324	Right-handed alpha
Helix 35	AD8	E	339	352	Right-handed alpha
Helix 36	AD9	E	368	380	Right-handed alpha
Helix 37	AE1	E	390	395	Right-handed alpha
Helix 38	AE2	E	396	398	Right-handed 310
Helix 39	AE3	E	420	430	Right-handed alpha
Helix 40	AE4	E	439	443	Right-handed 310
Helix 41	AE5	E	459	464	Right-handed 310
Helix 42	AE6	E	493	497	Right-handed 310
Helix 43	AE7	E	508	510	Right-handed 310
Helix 44	AE8	E	511	519	Right-handed alpha
Helix 45	AE9	G	5	17	Right-handed alpha
Helix 46	AF1	G	21	35	Right-handed alpha
Helix 47	AF2	G	41	60	Right-handed alpha
Helix 48	AF3	G	62	81	Right-handed alpha
Helix 49	AF4	G	88	106	Right-handed alpha
Helix 50	AF5	G	106	116	Right-handed alpha
Helix 51	AF6	G	117	119	Right-handed 310
Helix 52	AF7	G	131	144	Right-handed alpha
Helix 53	AF8	G	160	170	Right-handed alpha
Helix 54	AF9	G	179	183	Right-handed 310
Helix 55	AG1	G	212	222	Right-handed alpha
Helix 56	AG2	G	231	235	Right-handed 310
Helix 57	AG3	G	247	252	Right-handed alpha
Helix 58	AG4	G	277	281	Right-handed 310
Helix 59	AG5	G	294	304	Right-handed alpha
Helix 60	AG6	I	29	33	Right-handed 310
Helix 61	AG7	I	34	35	Right-handed 310
Helix 62	AG8	I	36	44	Right-handed alpha
Helix 63	AG9	I	85	93	Right-handed alpha
Helix 64	AH1	I	114	124	Right-handed alpha
Helix 65	AH2	I	184	190	Right-handed alpha
Helix 66	AH3	I	209	218	Right-handed alpha
Helix 67	AH4	I	223	236	Right-handed alpha
Helix 68	AH5	I	262	266	Right-handed 310
Helix 69	AH6	I	315	334	Right-handed alpha
Helix 70	AH7	B	58	62	Right-handed 310
Helix 71	AH8	B	64	68	Right-handed 310
Helix 72	AH9	B	74	87	Right-handed alpha
Helix 73	AI1	B	98	109	Right-handed alpha
Helix 74	AI2	B	110	113	Right-handed 310
Helix 75	AI3	B	130	142	Right-handed alpha
Helix 76	AI4	B	161	175	Right-handed alpha
Helix 77	AI5	B	253	263	Right-handed alpha
Helix 78	AI6	B	268	279	Right-handed alpha
Helix 79	AI7	B	302	315	Right-handed alpha
Helix 80	AI8	B	339	341	Right-handed 310
Helix 81	AI9	C	9	25	Right-handed alpha
Helix 82	AJ1	C	30	48	Right-handed alpha
Helix 83	AJ2	C	53	72	Right-handed alpha
Helix 84	AJ3	C	75	98	Right-handed alpha
Helix 85	AJ4	C	109	113	Right-handed alpha
Helix 86	AJ5	C	128	153	Right-handed alpha
Helix 87	AJ6	C	171	180	Right-handed alpha
Helix 88	AJ7	C	199	209	Right-handed alpha
Helix 89	AJ8	C	221	226	Right-handed alpha
Helix 90	AJ9	C	250	262	Right-handed alpha
Helix 91	AK1	C	270	274	Right-handed 310
Helix 92	AK2	C	300	305	Right-handed 310
Helix 93	AK3	C	317	321	Right-handed 310
Helix 94	AK4	C	332	334	Right-handed 310
Helix 95	AK5	C	335	344	Right-handed alpha
Helix 96	AK6	C	345	349	Right-handed 310
Helix 97	AK7	F	191	196	Right-handed 310
Helix 98	AK8	F	204	216	Right-handed alpha
Helix 99	AK9	F	221	240	Right-handed alpha
Helix 100	AL1	F	247	267	Right-handed alpha
Helix 101	AL2	F	270	286	Right-handed alpha
Helix 102	AL3	F	292	312	Right-handed alpha
Helix 103	AL4	F	312	324	Right-handed alpha
Helix 104	AL5	F	339	352	Right-handed alpha
Helix 105	AL6	F	368	380	Right-handed alpha
Helix 106	AL7	F	390	395	Right-handed alpha
Helix 107	AL8	F	396	398	Right-handed 310
Helix 108	AL9	F	420	430	Right-handed alpha
Helix 109	AM1	F	439	443	Right-handed 310
Helix 110	AM2	F	459	464	Right-handed 310
Helix 111	AM3	F	493	497	Right-handed 310
Helix 112	AM4	F	508	510	Right-handed 310
Helix 113	AM5	F	511	519	Right-handed alpha
Helix 114	AM6	H	5	17	Right-handed alpha
Helix 115	AM7	H	21	35	Right-handed alpha
Helix 116	AM8	H	41	60	Right-handed alpha
Helix 117	AM9	H	62	81	Right-handed alpha
Helix 118	AN1	H	88	106	Right-handed alpha
Helix 119	AN2	H	106	116	Right-handed alpha
Helix 120	AN3	H	117	119	Right-handed 310
Helix 121	AN4	H	131	144	Right-handed alpha
Helix 122	AN5	H	160	170	Right-handed alpha
Helix 123	AN6	H	179	183	Right-handed 310
Helix 124	AN7	H	212	222	Right-handed alpha
Helix 125	AN8	H	231	235	Right-handed 310
Helix 126	AN9	H	247	252	Right-handed alpha
Helix 127	AO1	H	277	281	Right-handed 310
Helix 128	AO2	H	294	304	Right-handed alpha
Helix 129	AO3	J	29	33	Right-handed 310
Helix 130	AO4	J	34	35	Right-handed 310
Helix 131	AO5	J	36	44	Right-handed alpha
Helix 132	AO6	J	85	93	Right-handed alpha
Helix 133	AO7	J	114	124	Right-handed alpha
Helix 134	AO8	J	184	190	Right-handed alpha
Helix 135	AO9	J	209	218	Right-handed alpha
Helix 136	AP1	J	223	236	Right-handed alpha
Helix 137	AP2	J	262	266	Right-handed 310
Helix 138	AP3	J	315	334	Right-handed alpha

There are 32 sheets in PDB entry 7TRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	90	95	parallel
Strand 3	A	44	48	parallel
Strand 4	A	148	152	parallel
Strand 5	A	245	252	anti-parallel
Strand 6	A	181	186	anti-parallel
Strand 7	A	287	292	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	297	299	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	217	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	238	241	anti-parallel
Strand 4	I	192	196	anti-parallel
Strand 5	I	156	160	anti-parallel
Strand 6	I	167	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	I	179	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	342	344	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	373	375	parallel
Strand 3	A	390	392	parallel
Strand 4	A	407	409	parallel
Strand 5	A	424	425	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	395	396	parallel
Strand 3	A	412	413	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	418	419	parallel
Strand 3	A	436	437	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	448	449	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	323	326	anti-parallel
Strand 3	D	265	268	parallel
Strand 4	D	231	234	parallel
Strand 5	D	163	168	parallel
Strand 6	D	187	192	parallel
Strand 7	D	214	217	parallel
Strand 8	E	483	484	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	E	383	387	parallel
Strand 3	E	357	362	parallel
Strand 4	E	332	336	parallel
Strand 5	E	400	404	parallel
Strand 6	E	434	437	parallel
Strand 7	E	499	501	parallel
Strand 8	E	506	507	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	414	417	anti-parallel
Strand 3	E	489	492	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	178	first strand
Strand 2	G	149	153	parallel
Strand 3	G	124	127	parallel
Strand 4	G	192	196	parallel
Strand 5	G	226	229	parallel
Strand 6	G	283	286	parallel
Strand 7	G	289	291	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	206	208	anti-parallel
Strand 3	G	274	276	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	77	first strand
Strand 2	I	51	55	parallel
Strand 3	I	3	8	parallel
Strand 4	I	100	105	parallel
Strand 5	I	200	207	anti-parallel
Strand 6	I	128	133	anti-parallel
Strand 7	I	300	304	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	90	95	parallel
Strand 3	B	44	48	parallel
Strand 4	B	148	152	parallel
Strand 5	B	245	252	anti-parallel
Strand 6	B	181	186	anti-parallel
Strand 7	B	287	292	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	297	299	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	217	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	238	241	anti-parallel
Strand 4	J	192	196	anti-parallel
Strand 5	J	156	160	anti-parallel
Strand 6	J	167	172	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	J	180	183	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	342	344	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	373	375	parallel
Strand 3	B	390	392	parallel
Strand 4	B	407	409	parallel
Strand 5	B	424	425	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	379	first strand
Strand 2	B	395	396	parallel
Strand 3	B	412	413	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	418	419	parallel
Strand 3	B	436	437	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	448	449	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	323	326	anti-parallel
Strand 3	C	265	268	parallel
Strand 4	C	231	234	parallel
Strand 5	C	163	168	parallel
Strand 6	C	187	192	parallel
Strand 7	C	214	217	parallel
Strand 8	F	483	484	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	313	316	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	F	383	387	parallel
Strand 3	F	357	362	parallel
Strand 4	F	332	336	parallel
Strand 5	F	400	404	parallel
Strand 6	F	434	437	parallel
Strand 7	F	499	501	parallel
Strand 8	F	506	507	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	414	417	anti-parallel
Strand 3	F	489	492	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	178	first strand
Strand 2	H	149	153	parallel
Strand 3	H	124	127	parallel
Strand 4	H	192	196	parallel
Strand 5	H	226	229	parallel
Strand 6	H	283	286	parallel
Strand 7	H	289	291	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	200	first strand
Strand 2	H	206	208	anti-parallel
Strand 3	H	274	276	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	77	first strand
Strand 2	J	51	55	parallel
Strand 3	J	3	8	parallel
Strand 4	J	100	105	parallel
Strand 5	J	200	207	anti-parallel
Strand 6	J	128	133	anti-parallel
Strand 7	J	300	304	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRJ