Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TRY entry

There are 6 chains in PDB entry 7TRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ASN 41	LEU 383
U	ASN 2	VAL 40
A	SER 12	VAL 359
B	GLU 3	ASN 340
G	ALA 7	ARG 62
H	VAL 2	GLU 246

There are 32 helices in PDB entry 7TRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	109	141	Right-handed alpha
Helix 2	AA2	P	146	169	Right-handed alpha
Helix 3	AA3	P	173	179	Right-handed alpha
Helix 4	AA4	P	181	215	Right-handed alpha
Helix 5	AA5	P	215	222	Right-handed alpha
Helix 6	AA6	P	223	233	Right-handed alpha
Helix 7	AA7	P	234	250	Right-handed alpha
Helix 8	AA8	P	265	298	Right-handed alpha
Helix 9	AA9	P	300	319	Right-handed alpha
Helix 10	AB1	P	321	326	Right-handed alpha
Helix 11	AB2	P	333	361	Right-handed alpha
Helix 12	AB3	P	363	383	Right-handed alpha
Helix 13	AB4	U	5	7	Right-handed 310
Helix 14	AB5	U	8	40	Right-handed alpha
Helix 15	AB6	A	13	38	Right-handed alpha
Helix 16	AB7	A	47	50	Right-handed 310
Helix 17	AB8	A	51	61	Right-handed alpha
Helix 18	AB9	A	212	221	Right-handed 310
Helix 19	AC1	A	233	237	Right-handed 310
Helix 20	AC2	A	246	260	Right-handed alpha
Helix 21	AC3	A	275	286	Right-handed alpha
Helix 22	AC4	A	301	315	Right-handed alpha
Helix 23	AC5	A	335	356	Right-handed alpha
Helix 24	AC6	B	4	25	Right-handed alpha
Helix 25	AC7	B	29	37	Right-handed 310
Helix 26	AC8	G	8	24	Right-handed alpha
Helix 27	AC9	G	29	44	Right-handed alpha
Helix 28	AD1	G	45	48	Right-handed 310
Helix 29	AD2	H	28	32	Right-handed 310
Helix 30	AD3	H	53	56	Right-handed 310
Helix 31	AD4	H	87	91	Right-handed 310
Helix 32	AD5	H	220	224	Right-handed 310

There are 15 sheets in PDB entry 7TRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	63	first strand
Strand 2	P	78	81	anti-parallel
Strand 3	P	93	94	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	67	68	first strand
Strand 2	P	71	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	39	45	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	324	328	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	155	161	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	207	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	185	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TRY