Analysis of interatomic Contacts of Structural Units in PDB entry:
7TTR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TTR entry

There are 7 chains in PDB entry 7TTR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 327	VAL 653
B	ARG 327	SER 656
C	ARG 327	LYS 673
D	ARG 327	LYS 677
E	ARG 327	ARG 674
F	ARG 327	VAL 653
P	UNK 1	UNK 14

There are115 helices in PDB entry 7TTR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	327	336	Right-handed alpha
Helix 2	AA2	A	338	347	Right-handed alpha
Helix 3	AA3	A	350	366	Right-handed alpha
Helix 4	AA4	A	386	400	Right-handed alpha
Helix 5	AA5	A	402	404	Right-handed 310
Helix 6	AA6	A	412	414	Right-handed 310
Helix 7	AA7	A	416	418	Right-handed 310
Helix 8	AA8	A	419	425	Right-handed alpha
Helix 9	AA9	A	437	444	Right-handed alpha
Helix 10	AB1	A	456	459	Right-handed 310
Helix 11	AB2	A	460	474	Right-handed alpha
Helix 12	AB3	A	498	506	Right-handed alpha
Helix 13	AB4	A	544	553	Right-handed alpha
Helix 14	AB5	A	554	562	Right-handed alpha
Helix 15	AB6	A	572	590	Right-handed alpha
Helix 16	AB7	A	593	597	Right-handed 310
Helix 17	AB8	A	603	612	Right-handed alpha
Helix 18	AB9	A	614	617	Right-handed 310
Helix 19	AC1	A	618	641	Right-handed alpha
Helix 20	AC2	B	328	337	Right-handed alpha
Helix 21	AC3	B	338	347	Right-handed alpha
Helix 22	AC4	B	350	366	Right-handed alpha
Helix 23	AC5	B	386	399	Right-handed alpha
Helix 24	AC6	B	412	415	Right-handed 310
Helix 25	AC7	B	416	418	Right-handed 310
Helix 26	AC8	B	419	425	Right-handed alpha
Helix 27	AC9	B	437	446	Right-handed alpha
Helix 28	AD1	B	455	459	Right-handed 310
Helix 29	AD2	B	460	466	Right-handed alpha
Helix 30	AD3	B	466	474	Right-handed alpha
Helix 31	AD4	B	498	511	Right-handed alpha
Helix 32	AD5	B	539	544	Right-handed 310
Helix 33	AD6	B	545	553	Right-handed alpha
Helix 34	AD7	B	555	561	Right-handed alpha
Helix 35	AD8	B	572	596	Right-handed alpha
Helix 36	AD9	B	602	612	Right-handed alpha
Helix 37	AE1	B	618	630	Right-handed alpha
Helix 38	AE2	B	630	640	Right-handed alpha
Helix 39	AE3	C	328	337	Right-handed alpha
Helix 40	AE4	C	338	345	Right-handed alpha
Helix 41	AE5	C	350	366	Right-handed alpha
Helix 42	AE6	C	386	399	Right-handed alpha
Helix 43	AE7	C	402	404	Right-handed 310
Helix 44	AE8	C	412	414	Right-handed 310
Helix 45	AE9	C	416	419	Right-handed 310
Helix 46	AF1	C	420	425	Right-handed alpha
Helix 47	AF2	C	437	446	Right-handed alpha
Helix 48	AF3	C	455	459	Right-handed 310
Helix 49	AF4	C	460	465	Right-handed alpha
Helix 50	AF5	C	466	474	Right-handed alpha
Helix 51	AF6	C	498	506	Right-handed alpha
Helix 52	AF7	C	507	512	Right-handed 310
Helix 53	AF8	C	538	553	Right-handed alpha
Helix 54	AF9	C	555	560	Right-handed alpha
Helix 55	AG1	C	572	596	Right-handed alpha
Helix 56	AG2	C	602	611	Right-handed alpha
Helix 57	AG3	C	618	630	Right-handed alpha
Helix 58	AG4	C	630	641	Right-handed alpha
Helix 59	AG5	D	328	336	Right-handed alpha
Helix 60	AG6	D	338	347	Right-handed alpha
Helix 61	AG7	D	350	366	Right-handed alpha
Helix 62	AG8	D	386	400	Right-handed alpha
Helix 63	AG9	D	402	404	Right-handed 310
Helix 64	AH1	D	412	414	Right-handed 310
Helix 65	AH2	D	416	419	Right-handed 310
Helix 66	AH3	D	420	425	Right-handed alpha
Helix 67	AH4	D	437	446	Right-handed alpha
Helix 68	AH5	D	456	459	Right-handed 310
Helix 69	AH6	D	460	474	Right-handed alpha
Helix 70	AH7	D	498	514	Right-handed alpha
Helix 71	AH8	D	539	544	Right-handed alpha
Helix 72	AH9	D	544	554	Right-handed alpha
Helix 73	AI1	D	555	561	Right-handed alpha
Helix 74	AI2	D	572	596	Right-handed alpha
Helix 75	AI3	D	602	611	Right-handed alpha
Helix 76	AI4	D	612	613	Right-handed 310
Helix 77	AI5	D	614	617	Right-handed 310
Helix 78	AI6	D	618	630	Right-handed alpha
Helix 79	AI7	D	630	638	Right-handed alpha
Helix 80	AI8	E	328	335	Right-handed alpha
Helix 81	AI9	E	338	347	Right-handed alpha
Helix 82	AJ1	E	350	367	Right-handed alpha
Helix 83	AJ2	E	386	400	Right-handed alpha
Helix 84	AJ3	E	402	404	Right-handed 310
Helix 85	AJ4	E	412	414	Right-handed 310
Helix 86	AJ5	E	416	419	Right-handed 310
Helix 87	AJ6	E	420	425	Right-handed alpha
Helix 88	AJ7	E	437	446	Right-handed alpha
Helix 89	AJ8	E	455	459	Right-handed 310
Helix 90	AJ9	E	460	474	Right-handed alpha
Helix 91	AK1	E	498	517	Right-handed alpha
Helix 92	AK2	E	538	554	Right-handed alpha
Helix 93	AK3	E	555	562	Right-handed alpha
Helix 94	AK4	E	572	596	Right-handed alpha
Helix 95	AK5	E	602	611	Right-handed alpha
Helix 96	AK6	E	618	630	Right-handed alpha
Helix 97	AK7	E	630	639	Right-handed alpha
Helix 98	AK8	F	328	337	Right-handed alpha
Helix 99	AK9	F	338	347	Right-handed alpha
Helix 100	AL1	F	350	366	Right-handed alpha
Helix 101	AL2	F	386	399	Right-handed alpha
Helix 102	AL3	F	410	414	Right-handed 310
Helix 103	AL4	F	418	423	Right-handed alpha
Helix 104	AL5	F	439	444	Right-handed alpha
Helix 105	AL6	F	455	459	Right-handed 310
Helix 106	AL7	F	460	467	Right-handed alpha
Helix 107	AL8	F	468	471	Right-handed 310
Helix 108	AL9	F	498	504	Right-handed alpha
Helix 109	AM1	F	506	511	Right-handed alpha
Helix 110	AM2	F	548	554	Right-handed alpha
Helix 111	AM3	F	572	591	Right-handed alpha
Helix 112	AM4	F	593	597	Right-handed 310
Helix 113	AM5	F	601	611	Right-handed alpha
Helix 114	AM6	F	618	630	Right-handed alpha
Helix 115	AM7	F	630	640	Right-handed alpha

There are 15 sheets in PDB entry 7TTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	410	first strand
Strand 2	A	450	454	parallel
Strand 3	A	490	495	parallel
Strand 4	A	375	380	parallel
Strand 5	A	564	567	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	483	485	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	410	first strand
Strand 2	B	450	454	parallel
Strand 3	B	490	495	parallel
Strand 4	B	375	381	parallel
Strand 5	B	564	568	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	483	485	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	601	first strand
Strand 2	B	648	651	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	410	first strand
Strand 2	C	450	454	parallel
Strand 3	C	490	495	parallel
Strand 4	C	375	381	parallel
Strand 5	C	564	568	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	477	first strand
Strand 2	C	483	485	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	601	first strand
Strand 2	C	648	653	parallel
Strand 3	C	657	660	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	410	first strand
Strand 2	D	450	454	parallel
Strand 3	D	490	494	parallel
Strand 4	D	375	381	parallel
Strand 5	D	564	568	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	600	first strand
Strand 2	D	646	651	parallel
Strand 3	D	659	662	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	406	410	first strand
Strand 2	E	450	454	parallel
Strand 3	E	490	494	parallel
Strand 4	E	375	380	parallel
Strand 5	E	564	567	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	477	first strand
Strand 2	E	483	485	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	597	600	first strand
Strand 2	E	645	651	parallel
Strand 3	E	656	658	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	406	409	first strand
Strand 2	F	450	453	parallel
Strand 3	F	490	495	parallel
Strand 4	F	375	380	parallel
Strand 5	F	564	567	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	474	477	first strand
Strand 2	F	483	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TTR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TTR