Analysis of interatomic Contacts of Structural Units in PDB entry:
7TUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TUE entry

There are 3 chains in PDB entry 7TUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	TRP 274
D	GLY 1	GLU 381
B	ARG 3	ASP 98

There are 9 helices in PDB entry 7TUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	56	84	Right-handed alpha
Helix 3	AA3	A	137	149	Right-handed alpha
Helix 4	AA4	A	151	161	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	252	255	Right-handed 310
Helix 7	AA7	D	53	61	Right-handed alpha
Helix 8	AA8	D	83	87	Right-handed 310
Helix 9	AA9	D	96	100	Right-handed 310

There are 12 sheets in PDB entry 7TUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	35	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	4	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	122	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	133	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	194	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	194	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	45	47	parallel
Strand 3	D	21	26	parallel
Strand 4	D	4	9	anti-parallel
Strand 5	D	70	75	parallel
Strand 6	D	104	109	anti-parallel
Strand 7	D	114	119	anti-parallel
Strand 8	D	137	143	anti-parallel
Strand 9	D	161	164	anti-parallel
Strand 10	D	231	240	anti-parallel
Strand 11	D	155	158	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	45	47	parallel
Strand 3	D	21	26	parallel
Strand 4	D	4	9	anti-parallel
Strand 5	D	70	75	parallel
Strand 6	D	104	109	anti-parallel
Strand 7	D	114	119	anti-parallel
Strand 8	D	137	143	anti-parallel
Strand 9	D	161	164	anti-parallel
Strand 10	D	231	240	anti-parallel
Strand 11	D	216	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	247	255	anti-parallel
Strand 4	D	258	266	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	293	297	anti-parallel
Strand 3	D	343	347	anti-parallel
Strand 4	D	326	328	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	313	first strand
Strand 2	D	359	365	anti-parallel
Strand 3	D	374	379	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	65	70	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TUE