Analysis of interatomic Contacts of Structural Units in PDB entry:
7TUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TUV entry

There are 2 chains in PDB entry 7TUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 234GLY 945
B
 G 2 U 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7TUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 252Right-handed alpha
Helix 2
AA2
A
287 292Right-handed alpha
Helix 3
AA3
A
306 310Right-handed 310
Helix 4
AA4
A
344 351Right-handed alpha
Helix 5
AA5
A
375 381Right-handed alpha
Helix 6
AA6
A
413 418Right-handed alpha
Helix 7
AA7
A
449 461Right-handed alpha
Helix 8
AA8
A
469 474Right-handed alpha
Helix 9
AA9
A
484 489Right-handed alpha
Helix 10
AB1
A
532 537Right-handed alpha
Helix 11
AB2
A
541 551Right-handed alpha
Helix 12
AB3
A
565 571Right-handed alpha
Helix 13
AB4
A
614 623Right-handed alpha
Helix 14
AB5
A
628 652Right-handed alpha
Helix 15
AB6
A
681 706Right-handed alpha
Helix 16
AB7
A
723 735Right-handed alpha
Helix 17
AB8
A
742 752Right-handed alpha
Helix 18
AB9
A
760 769Right-handed alpha
Helix 19
AC1
A
770 773Right-handed 310
Helix 20
AC2
A
785 790Right-handed 310
Helix 21
AC3
A
808 823Right-handed alpha
Helix 22
AC4
A
833 868Right-handed alpha
Helix 23
AC5
A
869 871Right-handed 310
Helix 24
AC6
A
906 908Right-handed 310
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There are 8 sheets in PDB entry 7TUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 286first strand
Strand 2
A
268 272anti-parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
299 304anti-parallel
Strand 5
A
357 363anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
393 399anti-parallel
Strand 3
A
407 411anti-parallel
Strand 4
A
437 446parallel
Strand 5
A
420 428anti-parallel
Strand 6
A
370 374anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
A
596 606parallel
Strand 3
A
581 590anti-parallel
Strand 4
A
523 531anti-parallel
Strand 5
A
512 519anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
610 613parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
560 561anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 664first strand
Strand 2
A
674 677anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 714first strand
Strand 2
A
777 780anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 904first strand
Strand 2
A
889 894anti-parallel
Strand 3
A
878 885anti-parallel
Strand 4
A
917 924anti-parallel
Strand 5
A
935 939anti-parallel
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