Analysis of interatomic Contacts of Structural Units in PDB entry:
7TUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TUY entry

There are 4 chains in PDB entry 7TUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213
R	TYR 24	MET 310

There are 24 helices in PDB entry 7TUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	90	94	Right-handed 310
Helix 2	AA2	H	107	112	Right-handed alpha
Helix 3	AA3	H	201	206	Right-handed 310
Helix 4	AA4	H	214	218	Right-handed 310
Helix 5	AA5	L	123	128	Right-handed alpha
Helix 6	AA6	L	185	189	Right-handed alpha
Helix 7	AA7	R	26	59	Right-handed alpha
Helix 8	AA8	R	66	83	Right-handed alpha
Helix 9	AA9	R	101	133	Right-handed alpha
Helix 10	AB1	R	135	143	Right-handed alpha
Helix 11	AB2	R	144	164	Right-handed alpha
Helix 12	AB3	R	165	168	Right-handed 310
Helix 13	AB4	R	195	205	Right-handed alpha
Helix 14	AB5	R	205	225	Right-handed alpha
Helix 15	AB6	R	1002	1025	Right-handed alpha
Helix 16	AB7	R	1030	1046	Right-handed alpha
Helix 17	AB8	R	1062	1087	Right-handed alpha
Helix 18	AB9	R	1090	1092	Right-handed alpha
Helix 19	AC1	R	1094	1107	Right-handed alpha
Helix 20	AC2	R	1107	1117	Right-handed alpha
Helix 21	AC3	R	227	247	Right-handed alpha
Helix 22	AC4	R	247	260	Right-handed alpha
Helix 23	AC5	R	276	301	Right-handed alpha
Helix 24	AC6	R	305	310	Right-handed alpha

There are 15 sheets in PDB entry 7TUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	124	125	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	63	first strand
Strand 2	H	48	54	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	63	first strand
Strand 2	H	48	54	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	96	99	anti-parallel
Strand 5	H	121	122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	209	213	anti-parallel
Strand 3	H	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	21	25	anti-parallel
Strand 3	K	78	82	anti-parallel
Strand 4	K	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	34	38	anti-parallel
Strand 4	K	96	99	anti-parallel
Strand 5	K	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	93	first strand
Strand 2	K	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	89	91	anti-parallel
Strand 5	L	99	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	163	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TUY