Analysis of interatomic Contacts of Structural Units in PDB entry:
7TV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TV9 entry

There are 2 chains in PDB entry 7TV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 642
B	ASP 730	MET 1378

There are 31 helices in PDB entry 7TV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	266	Right-handed 310
Helix 2	AA2	A	281	291	Right-handed alpha
Helix 3	AA3	A	293	298	Right-handed 310
Helix 4	AA4	A	426	430	Right-handed 310
Helix 5	AA5	A	579	584	Right-handed alpha
Helix 6	AA6	A	590	601	Right-handed alpha
Helix 7	AA7	A	613	619	Right-handed alpha
Helix 8	AA8	B	735	739	Right-handed 310
Helix 9	AA9	B	760	764	Right-handed 310
Helix 10	AB1	B	974	982	Right-handed 310
Helix 11	AB2	B	990	1009	Right-handed alpha
Helix 12	AB3	B	1011	1016	Right-handed alpha
Helix 13	AB4	B	1018	1036	Right-handed alpha
Helix 14	AB5	B	1054	1066	Right-handed alpha
Helix 15	AB6	B	1074	1088	Right-handed alpha
Helix 16	AB7	B	1116	1132	Right-handed alpha
Helix 17	AB8	B	1142	1157	Right-handed alpha
Helix 18	AB9	B	1165	1177	Right-handed alpha
Helix 19	AC1	B	1181	1192	Right-handed alpha
Helix 20	AC2	B	1205	1221	Right-handed alpha
Helix 21	AC3	B	1227	1238	Right-handed alpha
Helix 22	AC4	B	1246	1264	Right-handed alpha
Helix 23	AC5	B	1392	1401	Right-handed alpha
Helix 24	AC6	B	1408	1413	Right-handed alpha
Helix 25	AC7	B	1506	1513	Right-handed alpha
Helix 26	AC8	B	1565	1569	Right-handed 310
Helix 27	AC9	B	1611	1615	Right-handed 310
Helix 28	AD1	B	1620	1636	Right-handed alpha
Helix 29	AD2	C	16	20	Right-handed 310
Helix 30	AD3	C	46	50	Right-handed 310
Helix 31	AD4	C	51	63	Right-handed alpha

There are 32 sheets in PDB entry 7TV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	83	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	50	54	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	122	131	anti-parallel
Strand 3	A	166	172	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	195	202	parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	140	144	anti-parallel
Strand 5	A	155	159	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	231	237	anti-parallel
Strand 3	A	275	278	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	326	327	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	245	253	anti-parallel
Strand 3	A	267	271	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	245	253	anti-parallel
Strand 3	A	302	310	anti-parallel
Strand 4	A	316	321	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	384	389	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	416	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	366	369	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	438	first strand
Strand 2	A	448	456	anti-parallel
Strand 3	A	492	498	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	515	anti-parallel
Strand 4	A	523	532	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	558	565	anti-parallel
Strand 3	B	765	767	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	558	565	anti-parallel
Strand 3	B	770	772	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	756	first strand
Strand 2	A	569	572	anti-parallel
Strand 3	B	785	788	anti-parallel
Strand 4	B	792	795	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	576	first strand
Strand 2	B	748	749	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	742	first strand
Strand 2	B	902	903	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	782	first strand
Strand 2	B	799	801	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	880	anti-parallel
Strand 4	B	850	851	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	906	910	parallel
Strand 3	B	884	887	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	866	first strand
Strand 2	B	838	844	anti-parallel
Strand 3	B	890	891	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	917	first strand
Strand 2	B	1325	1328	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	925	first strand
Strand 2	B	1318	1322	anti-parallel
Strand 3	B	956	959	anti-parallel
Strand 4	B	1301	1302	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	939	940	first strand
Strand 2	B	1308	1309	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1038	1039	first strand
Strand 2	B	1043	1044	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1289	1290	first strand
Strand 2	B	1271	1272	anti-parallel
Strand 3	B	1314	1315	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1340	1347	first strand
Strand 2	B	1362	1369	anti-parallel
Strand 3	B	1435	1442	anti-parallel
Strand 4	B	1390	1391	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1406	first strand
Strand 2	B	1421	1426	anti-parallel
Strand 3	B	1379	1384	anti-parallel
Strand 4	B	1453	1459	anti-parallel
Strand 5	B	1467	1471	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1484	1485	first strand
Strand 2	B	1488	1489	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1579	1585	first strand
Strand 2	B	1519	1531	anti-parallel
Strand 3	B	1537	1548	anti-parallel
Strand 4	B	1559	1564	anti-parallel
Strand 5	B	1598	1599	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	11	15	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	29	33	anti-parallel
Strand 3	C	42	45	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TV9