Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TVE entry

There are 7 chains in PDB entry 7TVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	A 27
B	T 1	T 27
C	THR 13	ILE 336
D	GLU 75	MET 1101
E	PRO 32	PHE 1092
F	LEU 12	ILE 303
G	ASP 43	PRO 399

There are 57 helices in PDB entry 7TVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	28	Right-handed alpha
Helix 2	AA2	C	34	48	Right-handed alpha
Helix 3	AA3	C	56	79	Right-handed alpha
Helix 4	AA4	C	90	100	Right-handed alpha
Helix 5	AA5	C	142	146	Right-handed 310
Helix 6	AA6	C	151	171	Right-handed alpha
Helix 7	AA7	C	181	196	Right-handed alpha
Helix 8	AA8	C	212	217	Right-handed alpha
Helix 9	AA9	C	223	237	Right-handed alpha
Helix 10	AB1	C	260	265	Right-handed alpha
Helix 11	AB2	C	306	316	Right-handed alpha
Helix 12	AB3	D	115	125	Right-handed alpha
Helix 13	AB4	D	130	134	Right-handed 310
Helix 14	AB5	D	138	142	Right-handed 310
Helix 15	AB6	D	200	212	Right-handed alpha
Helix 16	AB7	D	226	233	Right-handed alpha
Helix 17	AB8	D	235	247	Right-handed alpha
Helix 18	AB9	D	248	295	Right-handed alpha
Helix 19	AC1	D	307	311	Right-handed 310
Helix 20	AC2	D	903	916	Right-handed alpha
Helix 21	AC3	D	921	984	Right-handed alpha
Helix 22	AC4	D	1021	1033	Right-handed alpha
Helix 23	AC5	D	1054	1072	Right-handed alpha
Helix 24	AC6	E	77	86	Right-handed alpha
Helix 25	AC7	E	98	103	Right-handed 310
Helix 26	AC8	E	158	169	Right-handed alpha
Helix 27	AC9	E	181	188	Right-handed 310
Helix 28	AD1	E	192	202	Right-handed alpha
Helix 29	AD2	E	206	262	Right-handed alpha
Helix 30	AD3	E	868	878	Right-handed alpha
Helix 31	AD4	E	903	945	Right-handed alpha
Helix 32	AD5	E	987	1002	Right-handed alpha
Helix 33	AD6	E	1022	1037	Right-handed alpha
Helix 34	AD7	F	13	25	Right-handed alpha
Helix 35	AD8	F	28	36	Right-handed alpha
Helix 36	AD9	F	48	56	Right-handed alpha
Helix 37	AE1	F	59	63	Right-handed 310
Helix 38	AE2	F	68	83	Right-handed alpha
Helix 39	AE3	F	132	145	Right-handed alpha
Helix 40	AE4	F	146	150	Right-handed alpha
Helix 41	AE5	F	200	209	Right-handed alpha
Helix 42	AE6	F	227	237	Right-handed alpha
Helix 43	AE7	F	260	265	Right-handed alpha
Helix 44	AE8	F	267	279	Right-handed alpha
Helix 45	AE9	F	283	287	Right-handed 310
Helix 46	AF1	F	288	298	Right-handed alpha
Helix 47	AF2	G	44	71	Right-handed alpha
Helix 48	AF3	G	74	90	Right-handed alpha
Helix 49	AF4	G	98	119	Right-handed alpha
Helix 50	AF5	G	131	143	Right-handed alpha
Helix 51	AF6	G	144	151	Right-handed alpha
Helix 52	AF7	G	214	218	Right-handed 310
Helix 53	AF8	G	242	246	Right-handed 310
Helix 54	AF9	G	289	300	Right-handed alpha
Helix 55	AG1	G	319	334	Right-handed alpha
Helix 56	AG2	G	362	373	Right-handed alpha
Helix 57	AG3	G	385	388	Right-handed 310

There are 12 sheets in PDB entry 7TVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	131	137	anti-parallel
Strand 3	C	80	86	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	205	208	anti-parallel
Strand 3	C	333	336	parallel
Strand 4	C	281	283	anti-parallel
Strand 5	C	304	305	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	99	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	149	155	anti-parallel
Strand 4	D	174	180	anti-parallel
Strand 5	D	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1043	1047	first strand
Strand 2	D	1076	1080	parallel
Strand 3	D	105	108	parallel
Strand 4	D	1098	1100	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	990	993	first strand
Strand 2	D	1002	1005	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	57	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	110	117	anti-parallel
Strand 4	E	134	141	anti-parallel
Strand 5	E	150	152	anti-parallel
Strand 6	E	156	157	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1010	1014	first strand
Strand 2	E	1043	1048	parallel
Strand 3	E	64	68	parallel
Strand 4	E	1061	1063	parallel
Strand 5	G	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	951	956	first strand
Strand 2	E	965	970	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	122	125	anti-parallel
Strand 3	F	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	152	first strand
Strand 2	F	155	156	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	256	258	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	306	first strand
Strand 2	G	349	351	anti-parallel
Strand 3	G	337	339	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVE