Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TVF entry

There are 5 chains in PDB entry 7TVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 7	ALA 299
C	LYS 6	PRO 322
E	VAL 6	GLN 178
B	SER 4	GLN 178
A	PRO 62	ILE 374

There are 80 helices in PDB entry 7TVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	8	18	Right-handed alpha
Helix 2	AA2	F	31	49	Right-handed alpha
Helix 3	AA3	F	68	80	Right-handed alpha
Helix 4	AA4	F	99	114	Right-handed alpha
Helix 5	AA5	F	127	132	Right-handed alpha
Helix 6	AA6	F	135	144	Right-handed alpha
Helix 7	AA7	F	145	157	Right-handed alpha
Helix 8	AA8	F	183	188	Right-handed alpha
Helix 9	AA9	F	199	207	Right-handed alpha
Helix 10	AB1	F	228	239	Right-handed alpha
Helix 11	AB2	F	271	275	Right-handed 310
Helix 12	AB3	C	8	18	Right-handed alpha
Helix 13	AB4	C	19	21	Right-handed 310
Helix 14	AB5	C	31	49	Right-handed alpha
Helix 15	AB6	C	68	80	Right-handed alpha
Helix 16	AB7	C	99	114	Right-handed alpha
Helix 17	AB8	C	127	132	Right-handed alpha
Helix 18	AB9	C	135	144	Right-handed alpha
Helix 19	AC1	C	145	157	Right-handed alpha
Helix 20	AC2	C	183	188	Right-handed alpha
Helix 21	AC3	C	199	207	Right-handed alpha
Helix 22	AC4	C	228	240	Right-handed alpha
Helix 23	AC5	C	271	275	Right-handed 310
Helix 24	AC6	E	25	36	Right-handed alpha
Helix 25	AC7	E	71	75	Right-handed 310
Helix 26	AC8	E	77	84	Right-handed alpha
Helix 27	AC9	E	96	102	Right-handed alpha
Helix 28	AD1	E	102	115	Right-handed alpha
Helix 29	AD2	E	130	134	Right-handed 310
Helix 30	AD3	E	137	149	Right-handed alpha
Helix 31	AD4	E	163	177	Right-handed alpha
Helix 32	AD5	B	25	36	Right-handed alpha
Helix 33	AD6	B	71	75	Right-handed 310
Helix 34	AD7	B	77	84	Right-handed alpha
Helix 35	AD8	B	96	102	Right-handed alpha
Helix 36	AD9	B	102	115	Right-handed alpha
Helix 37	AE1	B	130	134	Right-handed 310
Helix 38	AE2	B	137	149	Right-handed alpha
Helix 39	AE3	B	163	177	Right-handed alpha
Helix 40	AE4	A	87	101	Right-handed alpha
Helix 41	AE5	A	116	122	Right-handed 310
Helix 42	AE6	A	139	145	Right-handed 310
Helix 43	AE7	A	162	168	Right-handed 310
Helix 44	AE8	A	187	191	Right-handed 310
Helix 45	AE9	A	208	214	Right-handed 310
Helix 46	AF1	A	231	237	Right-handed 310
Helix 47	AF2	A	254	260	Right-handed 310
Helix 48	AF3	A	277	283	Right-handed 310
Helix 49	AF4	A	300	306	Right-handed 310
Helix 50	AF5	A	325	330	Right-handed alpha
Helix 51	AF6	A	397	401	Right-handed 310
Helix 52	AF7	A	418	424	Right-handed 310
Helix 53	AF8	A	441	447	Right-handed 310
Helix 54	AF9	A	464	470	Right-handed 310
Helix 55	AG1	A	487	493	Right-handed 310
Helix 56	AG2	A	510	516	Right-handed 310
Helix 57	AG3	A	534	540	Right-handed 310
Helix 58	AG4	A	557	564	Right-handed alpha
Helix 59	AG5	A	564	575	Right-handed alpha
Helix 60	AG6	D	82	101	Right-handed alpha
Helix 61	AG7	D	116	122	Right-handed 310
Helix 62	AG8	D	139	145	Right-handed 310
Helix 63	AG9	D	162	168	Right-handed 310
Helix 64	AH1	D	187	191	Right-handed 310
Helix 65	AH2	D	208	214	Right-handed 310
Helix 66	AH3	D	231	237	Right-handed 310
Helix 67	AH4	D	254	260	Right-handed 310
Helix 68	AH5	D	277	283	Right-handed 310
Helix 69	AH6	D	300	306	Right-handed 310
Helix 70	AH7	D	326	330	Right-handed 310
Helix 71	AH8	D	350	355	Right-handed 310
Helix 72	AH9	D	397	401	Right-handed 310
Helix 73	AI1	D	418	424	Right-handed 310
Helix 74	AI2	D	441	447	Right-handed 310
Helix 75	AI3	D	464	470	Right-handed 310
Helix 76	AI4	D	487	493	Right-handed 310
Helix 77	AI5	D	510	516	Right-handed 310
Helix 78	AI6	D	534	540	Right-handed 310
Helix 79	AI7	D	557	564	Right-handed alpha
Helix 80	AI8	D	564	575	Right-handed alpha

There are 12 sheets in PDB entry 7TVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	55	first strand
Strand 2	F	162	165	parallel
Strand 3	F	169	172	anti-parallel
Strand 4	F	243	246	parallel
Strand 5	F	263	266	parallel
Strand 6	F	255	258	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	120	first strand
Strand 2	F	87	89	parallel
Strand 3	F	59	62	parallel
Strand 4	F	280	285	anti-parallel
Strand 5	F	290	296	anti-parallel
Strand 6	D	65	68	parallel
Strand 7	D	71	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	209	first strand
Strand 2	F	225	227	parallel
Strand 3	F	216	218	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	162	165	parallel
Strand 3	C	169	172	anti-parallel
Strand 4	C	243	246	parallel
Strand 5	C	263	266	parallel
Strand 6	C	255	258	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	87	89	parallel
Strand 3	C	59	62	parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	290	296	anti-parallel
Strand 6	A	65	68	parallel
Strand 7	A	71	73	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	225	227	parallel
Strand 3	C	216	218	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	56	first strand
Strand 2	E	59	68	anti-parallel
Strand 3	E	13	20	parallel
Strand 4	E	87	93	parallel
Strand 5	E	121	126	parallel
Strand 6	E	152	154	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	56	first strand
Strand 2	B	59	68	anti-parallel
Strand 3	B	13	20	parallel
Strand 4	B	87	93	parallel
Strand 5	B	121	126	parallel
Strand 6	B	152	154	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	127	129	parallel
Strand 3	A	150	152	parallel
Strand 4	A	173	175	parallel
Strand 5	A	196	198	parallel
Strand 6	A	219	221	parallel
Strand 7	A	242	244	parallel
Strand 8	A	265	267	parallel
Strand 9	A	288	290	parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	335	337	parallel
Strand 3	A	359	361	parallel
Strand 4	A	383	385	parallel
Strand 5	A	406	408	parallel
Strand 6	A	429	431	parallel
Strand 7	A	452	454	parallel
Strand 8	A	475	477	parallel
Strand 9	A	498	500	parallel
Strand 10	A	521	523	parallel
Strand 11	A	545	547	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	127	129	parallel
Strand 3	D	150	152	parallel
Strand 4	D	173	175	parallel
Strand 5	D	196	198	parallel
Strand 6	D	219	221	parallel
Strand 7	D	242	244	parallel
Strand 8	D	265	267	parallel
Strand 9	D	288	290	parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	335	337	parallel
Strand 3	D	359	361	parallel
Strand 4	D	383	385	parallel
Strand 5	D	406	408	parallel
Strand 6	D	429	431	parallel
Strand 7	D	452	454	parallel
Strand 8	D	475	477	parallel
Strand 9	D	498	500	parallel
Strand 10	D	521	523	parallel
Strand 11	D	545	547	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVF