Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TVI entry

There are 5 chains in PDB entry 7TVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 33	ILE 435
D	PRO 33	ILE 436
C	PRO 33	ILE 435
B	PRO 33	ILE 435
E	ALA 53	LEU 494

There are 41 helices in PDB entry 7TVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	41	Right-handed alpha
Helix 2	AA2	A	110	117	Right-handed 310
Helix 3	AA3	A	244	251	Right-handed alpha
Helix 4	AA4	A	251	263	Right-handed alpha
Helix 5	AA5	A	264	269	Right-handed alpha
Helix 6	AA6	A	273	297	Right-handed alpha
Helix 7	AA7	A	305	334	Right-handed alpha
Helix 8	AA8	A	402	435	Right-handed alpha
Helix 9	AA9	D	34	42	Right-handed alpha
Helix 10	AB1	D	95	98	Right-handed 310
Helix 11	AB2	D	110	117	Right-handed 310
Helix 12	AB3	D	168	171	Right-handed 310
Helix 13	AB4	D	244	251	Right-handed alpha
Helix 14	AB5	D	251	262	Right-handed alpha
Helix 15	AB6	D	263	268	Right-handed alpha
Helix 16	AB7	D	272	293	Right-handed alpha
Helix 17	AB8	D	305	332	Right-handed alpha
Helix 18	AB9	D	402	436	Right-handed alpha
Helix 19	AC1	C	34	39	Right-handed alpha
Helix 20	AC2	C	113	117	Right-handed 310
Helix 21	AC3	C	244	251	Right-handed alpha
Helix 22	AC4	C	251	263	Right-handed alpha
Helix 23	AC5	C	264	266	Right-handed 310
Helix 24	AC6	C	272	296	Right-handed alpha
Helix 25	AC7	C	305	334	Right-handed alpha
Helix 26	AC8	C	404	433	Right-handed alpha
Helix 27	AC9	B	34	41	Right-handed alpha
Helix 28	AD1	B	113	117	Right-handed 310
Helix 29	AD2	B	246	251	Right-handed alpha
Helix 30	AD3	B	251	264	Right-handed alpha
Helix 31	AD4	B	265	268	Right-handed 310
Helix 32	AD5	B	272	295	Right-handed alpha
Helix 33	AD6	B	305	334	Right-handed alpha
Helix 34	AD7	B	403	435	Right-handed alpha
Helix 35	AD8	E	55	60	Right-handed alpha
Helix 36	AD9	E	265	272	Right-handed alpha
Helix 37	AE1	E	272	283	Right-handed alpha
Helix 38	AE2	E	284	289	Right-handed alpha
Helix 39	AE3	E	296	316	Right-handed alpha
Helix 40	AE4	E	327	354	Right-handed alpha
Helix 41	AE5	E	469	493	Right-handed alpha

There are 24 sheets in PDB entry 7TVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	149	161	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	190	194	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	149	161	anti-parallel
Strand 3	A	81	93	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	200	202	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	212	213	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	173	181	anti-parallel
Strand 3	A	233	241	anti-parallel
Strand 4	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	230	231	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	149	161	anti-parallel
Strand 4	D	81	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	190	194	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	149	161	anti-parallel
Strand 3	D	81	93	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	200	202	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	181	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	211	213	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	181	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	218	221	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	230	231	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	140	144	anti-parallel
Strand 3	C	149	160	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	190	194	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	149	160	anti-parallel
Strand 3	C	81	93	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	200	202	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	211	213	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	233	242	anti-parallel
Strand 4	C	218	221	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	230	231	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	149	161	anti-parallel
Strand 4	B	81	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	190	194	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	149	161	anti-parallel
Strand 3	B	81	93	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	200	202	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	211	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	233	242	anti-parallel
Strand 4	B	218	221	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	230	231	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	129	first strand
Strand 2	E	160	165	anti-parallel
Strand 3	E	169	181	anti-parallel
Strand 4	E	100	112	anti-parallel
Strand 5	E	80	95	anti-parallel
Strand 6	E	210	214	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	152	first strand
Strand 2	E	169	181	anti-parallel
Strand 3	E	100	112	anti-parallel
Strand 4	E	80	95	anti-parallel
Strand 5	E	220	221	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	E	193	202	anti-parallel
Strand 3	E	254	263	anti-parallel
Strand 4	E	230	236	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	E	250	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVI