Analysis of interatomic Contacts of Structural Units in PDB entry:
7TVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TVJ entry

There are 4 chains in PDB entry 7TVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 248LEU 525
B
 GLY 2TYR 93
D
 GLU 250LEU 525
E
 GLY 2THR 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7TVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 258Right-handed alpha
Helix 2
AA2
A
266 277Right-handed 310
Helix 3
AA3
A
337 348Right-handed alpha
Helix 4
AA4
A
432 448Right-handed alpha
Helix 5
AA5
A
463 483Right-handed alpha
Helix 6
AA6
A
489 499Right-handed alpha
Helix 7
AA7
A
507 525Right-handed alpha
Helix 8
AA8
D
251 258Right-handed alpha
Helix 9
AA9
D
266 277Right-handed 310
Helix 10
AB1
D
322 325Right-handed 310
Helix 11
AB2
D
337 348Right-handed alpha
Helix 12
AB3
D
432 448Right-handed alpha
Helix 13
AB4
D
463 483Right-handed alpha
Helix 14
AB5
D
489 499Right-handed alpha
Helix 15
AB6
D
507 525Right-handed alpha
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There are 8 sheets in PDB entry 7TVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
455 458parallel
Strand 4
A
352 355parallel
Strand 5
A
408 420parallel
Strand 6
A
396 405anti-parallel
Strand 7
A
383 392anti-parallel
Strand 8
A
377 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
364 365anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
E
10 13anti-parallel
Strand 3
E
22 25anti-parallel
Strand 4
E
60 62anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
10 16anti-parallel
Strand 4
E
3 5anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
89 92anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 310first strand
Strand 2
D
327 330anti-parallel
Strand 3
D
455 458parallel
Strand 4
D
352 355parallel
Strand 5
D
408 420parallel
Strand 6
D
396 405anti-parallel
Strand 7
D
383 392anti-parallel
Strand 8
D
377 380anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
360 361first strand
Strand 2
D
364 365anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 55first strand
Strand 2
E
35 42anti-parallel
Strand 3
E
72 79anti-parallel
Strand 4
E
89 92anti-parallel
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