Analysis of interatomic Contacts of Structural Units in PDB entry:
7TY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TY0 entry

There are 8 chains in PDB entry 7TY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 96	ARG 172
B	GLY 96	PRO 163
J	GLU 1	VAL 117
K	VAL 2	THR 116
N	ILE 2	ILE 110
O	ILE 2	ILE 110
D	GLY 96	TYR 602
C	LEU 97	TYR 602

There are 32 helices in PDB entry 7TY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	104	Right-handed alpha
Helix 2	AA2	A	105	118	Right-handed alpha
Helix 3	AA3	A	118	146	Right-handed alpha
Helix 4	AA4	A	154	158	Right-handed 310
Helix 5	AA5	B	97	104	Right-handed alpha
Helix 6	AA6	B	105	118	Right-handed alpha
Helix 7	AA7	B	118	146	Right-handed alpha
Helix 8	AA8	J	28	32	Right-handed 310
Helix 9	AA9	J	53	57	Right-handed 310
Helix 10	AB1	J	89	93	Right-handed 310
Helix 11	AB2	K	28	32	Right-handed 310
Helix 12	AB3	K	53	57	Right-handed 310
Helix 13	AB4	K	76	78	Right-handed 310
Helix 14	AB5	N	30	34	Right-handed 310
Helix 15	AB6	N	83	87	Right-handed 310
Helix 16	AB7	O	83	87	Right-handed 310
Helix 17	AB8	D	97	104	Right-handed alpha
Helix 18	AB9	D	105	118	Right-handed alpha
Helix 19	AC1	D	118	146	Right-handed alpha
Helix 20	AC2	D	204	207	Right-handed 310
Helix 21	AC3	D	275	277	Right-handed 310
Helix 22	AC4	D	306	310	Right-handed 310
Helix 23	AC5	D	327	330	Right-handed 310
Helix 24	AC6	D	393	398	Right-handed alpha
Helix 25	AC7	C	98	104	Right-handed alpha
Helix 26	AC8	C	105	118	Right-handed alpha
Helix 27	AC9	C	118	146	Right-handed alpha
Helix 28	AD1	C	204	207	Right-handed 310
Helix 29	AD2	C	275	277	Right-handed 310
Helix 30	AD3	C	373	375	Right-handed 310
Helix 31	AD4	C	378	382	Right-handed 310
Helix 32	AD5	C	393	398	Right-handed alpha

There are 28 sheets in PDB entry 7TY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	D	158	161	anti-parallel
Strand 3	D	153	155	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	C	158	161	anti-parallel
Strand 3	C	154	155	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	80	85	anti-parallel
Strand 4	J	70	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	61	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	94	102	anti-parallel
Strand 5	J	105	109	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	61	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	94	102	anti-parallel
Strand 5	J	113	115	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	80	85	anti-parallel
Strand 4	K	70	75	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	113	116	parallel
Strand 3	K	94	102	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	60	62	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	113	116	parallel
Strand 3	K	94	102	anti-parallel
Strand 4	K	105	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	74	79	anti-parallel
Strand 4	N	66	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	106	109	parallel
Strand 3	N	88	94	anti-parallel
Strand 4	N	37	42	anti-parallel
Strand 5	N	49	53	anti-parallel
Strand 6	N	57	58	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	5	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	74	79	anti-parallel
Strand 4	O	66	71	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	30	31	first strand
Strand 2	O	34	35	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	49	52	first strand
Strand 2	O	37	42	anti-parallel
Strand 3	O	88	94	anti-parallel
Strand 4	O	101	102	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	49	52	first strand
Strand 2	O	37	42	anti-parallel
Strand 3	O	88	94	anti-parallel
Strand 4	O	106	108	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	558	568	anti-parallel
Strand 3	D	571	580	anti-parallel
Strand 4	D	589	596	anti-parallel
Strand 5	D	200	202	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	225	first strand
Strand 2	D	228	237	anti-parallel
Strand 3	D	244	257	anti-parallel
Strand 4	D	263	271	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	287	first strand
Strand 2	D	290	297	anti-parallel
Strand 3	D	314	320	anti-parallel
Strand 4	D	332	336	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	426	430	parallel
Strand 3	D	407	417	anti-parallel
Strand 4	D	361	371	anti-parallel
Strand 5	D	347	350	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	426	430	parallel
Strand 3	D	407	417	anti-parallel
Strand 4	D	361	371	anti-parallel
Strand 5	D	356	358	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	447	first strand
Strand 2	D	450	455	anti-parallel
Strand 3	D	465	471	anti-parallel
Strand 4	D	476	479	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	515	first strand
Strand 2	D	520	526	anti-parallel
Strand 3	D	535	541	anti-parallel
Strand 4	D	544	550	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	558	568	anti-parallel
Strand 3	C	571	581	anti-parallel
Strand 4	C	588	596	anti-parallel
Strand 5	C	201	202	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	225	first strand
Strand 2	C	228	237	anti-parallel
Strand 3	C	244	257	anti-parallel
Strand 4	C	263	271	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	287	first strand
Strand 2	C	290	297	anti-parallel
Strand 3	C	314	320	anti-parallel
Strand 4	C	332	337	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	426	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	347	350	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	426	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	356	358	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	450	455	anti-parallel
Strand 3	C	465	471	anti-parallel
Strand 4	C	476	479	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	515	first strand
Strand 2	C	520	526	anti-parallel
Strand 3	C	535	541	anti-parallel
Strand 4	C	544	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TY0