Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7TYB entry

There is 1 chain in PDB entry 7TYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 14ARG 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7TYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 28Right-handed alpha
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
62 79Right-handed alpha
Helix 4
AA4
A
94 108Right-handed alpha
Helix 5
AA5
A
119 131Right-handed alpha
Helix 6
AA6
A
146 156Right-handed alpha
Helix 7
AA7
A
176 181Right-handed 310
Helix 8
AA8
A
214 229Right-handed alpha
Helix 9
AA9
A
244 250Right-handed alpha
Helix 10
AB1
A
251 259Right-handed alpha
Helix 11
AB2
A
270 282Right-handed alpha
Helix 12
AB3
A
289 299Right-handed alpha
Helix 13
AB4
A
300 305Right-handed 310
Helix 14
AB5
A
321 326Right-handed alpha
Helix 15
AB6
A
327 333Right-handed alpha
Helix 16
AB7
A
355 362Right-handed alpha
Helix 17
AB8
A
405 413Right-handed alpha
Helix 18
AB9
A
440 442Right-handed 310
Helix 19
AC1
A
451 462Right-handed alpha
Helix 20
AC2
A
494 505Right-handed alpha
Helix 21
AC3
A
508 512Right-handed 310
Helix 22
AC4
A
531 540Right-handed alpha
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There are 6 sheets in PDB entry 7TYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
262 264parallel
Strand 4
A
235 237parallel
Strand 5
A
285 288parallel
Strand 6
A
312 316parallel
Strand 7
A
335 342parallel
Strand 8
A
345 349anti-parallel
Strand 9
A
365 366anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
86 89parallel
Strand 3
A
134 138parallel
Strand 4
A
161 165parallel
Strand 5
A
173 174parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
209 213anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 376first strand
Strand 2
A
389 394anti-parallel
Strand 3
A
419 427anti-parallel
Strand 4
A
433 438anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
448 450anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 475first strand
Strand 2
A
479 488anti-parallel
Strand 3
A
515 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il