Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYJ entry

There are 2 chains in PDB entry 7TYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	ASP 452
B	ARG 453	LEU 884

There are 13 helices in PDB entry 7TYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed 310
Helix 2	AA2	A	128	132	Right-handed 310
Helix 3	AA3	A	135	139	Right-handed 310
Helix 4	AA4	A	216	220	Right-handed 310
Helix 5	AA5	A	251	257	Right-handed alpha
Helix 6	AA6	A	269	273	Right-handed 310
Helix 7	AA7	A	311	316	Right-handed alpha
Helix 8	AA8	A	317	319	Right-handed 310
Helix 9	AA9	A	338	346	Right-handed alpha
Helix 10	AB1	A	423	435	Right-handed alpha
Helix 11	AB2	B	622	626	Right-handed 310
Helix 12	AB3	B	678	693	Right-handed alpha
Helix 13	AB4	B	841	848	Right-handed alpha

There are 15 sheets in PDB entry 7TYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	26	34	parallel
Strand 3	A	57	62	parallel
Strand 4	A	87	92	parallel
Strand 5	A	112	116	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	77	78	parallel
Strand 3	A	107	108	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	174	176	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	247	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	292	293	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	351	352	parallel
Strand 4	A	375	376	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	356	359	parallel
Strand 4	A	386	391	parallel
Strand 5	A	413	417	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	565	566	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	468	first strand
Strand 2	B	472	477	anti-parallel
Strand 3	B	534	537	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	490	497	anti-parallel
Strand 3	B	544	551	anti-parallel
Strand 4	B	570	573	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	591	first strand
Strand 2	B	594	600	anti-parallel
Strand 3	B	745	749	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	741	first strand
Strand 2	B	611	619	anti-parallel
Strand 3	B	756	764	anti-parallel
Strand 4	B	779	782	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	798	first strand
Strand 2	B	806	809	anti-parallel
Strand 3	B	849	852	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	840	first strand
Strand 2	B	820	829	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	879	883	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYJ