Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYK entry

There are 2 chains in PDB entry 7TYK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	LEU 884
B	VAL 1	LEU 884

There are 24 helices in PDB entry 7TYK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed 310
Helix 2	AA2	A	38	44	Right-handed alpha
Helix 3	AA3	A	135	139	Right-handed 310
Helix 4	AA4	A	216	220	Right-handed 310
Helix 5	AA5	A	250	258	Right-handed alpha
Helix 6	AA6	A	311	316	Right-handed alpha
Helix 7	AA7	A	317	319	Right-handed 310
Helix 8	AA8	A	338	346	Right-handed alpha
Helix 9	AA9	A	423	435	Right-handed alpha
Helix 10	AB1	A	622	626	Right-handed 310
Helix 11	AB2	A	678	693	Right-handed alpha
Helix 12	AB3	A	841	848	Right-handed alpha
Helix 13	AB4	B	13	18	Right-handed 310
Helix 14	AB5	B	38	44	Right-handed alpha
Helix 15	AB6	B	135	139	Right-handed 310
Helix 16	AB7	B	216	220	Right-handed 310
Helix 17	AB8	B	250	258	Right-handed alpha
Helix 18	AB9	B	311	316	Right-handed alpha
Helix 19	AC1	B	317	319	Right-handed 310
Helix 20	AC2	B	338	346	Right-handed alpha
Helix 21	AC3	B	423	435	Right-handed alpha
Helix 22	AC4	B	622	626	Right-handed 310
Helix 23	AC5	B	678	693	Right-handed alpha
Helix 24	AC6	B	841	848	Right-handed alpha

There are 32 sheets in PDB entry 7TYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	24	34	parallel
Strand 3	A	52	53	parallel
Strand 4	A	77	78	parallel
Strand 5	A	107	108	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	24	34	parallel
Strand 3	A	57	62	parallel
Strand 4	A	87	92	parallel
Strand 5	A	112	116	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	231	233	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	292	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	351	352	parallel
Strand 4	A	375	376	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	356	359	parallel
Strand 4	A	386	391	parallel
Strand 5	A	413	417	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	565	566	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	468	first strand
Strand 2	A	472	477	anti-parallel
Strand 3	A	534	537	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	522	first strand
Strand 2	A	491	497	anti-parallel
Strand 3	A	544	551	anti-parallel
Strand 4	A	570	573	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	591	first strand
Strand 2	A	594	600	anti-parallel
Strand 3	A	745	749	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	741	first strand
Strand 2	A	611	619	anti-parallel
Strand 3	A	756	764	anti-parallel
Strand 4	A	779	782	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	800	first strand
Strand 2	A	806	809	anti-parallel
Strand 3	A	849	852	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	840	first strand
Strand 2	A	820	829	anti-parallel
Strand 3	A	866	868	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	840	first strand
Strand 2	A	820	829	anti-parallel
Strand 3	A	858	863	anti-parallel
Strand 4	A	879	883	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	24	34	parallel
Strand 3	B	52	53	parallel
Strand 4	B	77	78	parallel
Strand 5	B	107	108	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	24	34	parallel
Strand 3	B	57	62	parallel
Strand 4	B	87	92	parallel
Strand 5	B	112	116	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	231	233	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	292	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	309	first strand
Strand 2	B	323	330	parallel
Strand 3	B	351	352	parallel
Strand 4	B	375	376	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	309	first strand
Strand 2	B	323	330	parallel
Strand 3	B	356	359	parallel
Strand 4	B	386	391	parallel
Strand 5	B	413	417	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	565	566	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	468	first strand
Strand 2	B	472	477	anti-parallel
Strand 3	B	534	537	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	491	497	anti-parallel
Strand 3	B	544	551	anti-parallel
Strand 4	B	570	573	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	591	first strand
Strand 2	B	594	600	anti-parallel
Strand 3	B	745	749	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	741	first strand
Strand 2	B	611	619	anti-parallel
Strand 3	B	756	764	anti-parallel
Strand 4	B	779	782	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	800	first strand
Strand 2	B	806	809	anti-parallel
Strand 3	B	849	852	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	840	first strand
Strand 2	B	820	829	anti-parallel
Strand 3	B	866	868	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	840	first strand
Strand 2	B	820	829	anti-parallel
Strand 3	B	858	863	anti-parallel
Strand 4	B	879	883	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYK