Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYL entry

There are 6 chains in PDB entry 7TYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	SER 2	ASN 340
G	SER 8	ARG 62
N	GLN 1	SER 128
P	LYS 1	TYR 37
R	TYR 41	PHE 409

There are 36 helices in PDB entry 7TYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	38	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed alpha
Helix 3	AA3	A	234	239	Right-handed 310
Helix 4	AA4	A	266	278	Right-handed alpha
Helix 5	AA5	A	293	304	Right-handed alpha
Helix 6	AA6	A	312	316	Right-handed 310
Helix 7	AA7	A	331	353	Right-handed alpha
Helix 8	AA8	A	370	391	Right-handed alpha
Helix 9	AA9	B	3	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	G	9	24	Right-handed alpha
Helix 12	AB3	G	29	45	Right-handed alpha
Helix 13	AB4	G	46	48	Right-handed 310
Helix 14	AB5	N	28	32	Right-handed 310
Helix 15	AB6	N	62	65	Right-handed 310
Helix 16	AB7	N	87	91	Right-handed 310
Helix 17	AB8	P	4	7	Right-handed 310
Helix 18	AB9	P	8	19	Right-handed alpha
Helix 19	AC1	R	42	61	Right-handed alpha
Helix 20	AC2	R	131	136	Right-handed 310
Helix 21	AC3	R	137	156	Right-handed alpha
Helix 22	AC4	R	157	159	Right-handed 310
Helix 23	AC5	R	160	173	Right-handed alpha
Helix 24	AC6	R	178	204	Right-handed alpha
Helix 25	AC7	R	208	214	Right-handed alpha
Helix 26	AC8	R	216	249	Right-handed alpha
Helix 27	AC9	R	259	267	Right-handed alpha
Helix 28	AD1	R	270	281	Right-handed alpha
Helix 29	AD2	R	287	291	Right-handed 310
Helix 30	AD3	R	295	297	Right-handed 310
Helix 31	AD4	R	298	330	Right-handed alpha
Helix 32	AD5	R	333	353	Right-handed alpha
Helix 33	AD6	R	354	359	Right-handed alpha
Helix 34	AD7	R	365	382	Right-handed alpha
Helix 35	AD8	R	383	392	Right-handed alpha
Helix 36	AD9	R	395	408	Right-handed alpha

There are 15 sheets in PDB entry 7TYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	213	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	362	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	263	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	285	287	anti-parallel
Strand 3	B	295	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	8	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	124	126	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	93	98	anti-parallel
Strand 5	N	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	72	first strand
Strand 2	R	85	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	76	first strand
Strand 2	R	81	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	92	94	first strand
Strand 2	R	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	112	113	first strand
Strand 2	R	117	118	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYL