Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYM entry

There are 2 chains in PDB entry 7TYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	LEU 884
B	VAL 1	LEU 884

There are 22 helices in PDB entry 7TYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed 310
Helix 2	AA2	A	135	139	Right-handed 310
Helix 3	AA3	A	146	150	Right-handed 310
Helix 4	AA4	A	216	220	Right-handed 310
Helix 5	AA5	A	251	258	Right-handed alpha
Helix 6	AA6	A	269	273	Right-handed 310
Helix 7	AA7	A	311	319	Right-handed 310
Helix 8	AA8	A	338	346	Right-handed alpha
Helix 9	AA9	A	423	435	Right-handed alpha
Helix 10	AB1	A	683	693	Right-handed alpha
Helix 11	AB2	A	841	848	Right-handed alpha
Helix 12	AB3	B	13	20	Right-handed 310
Helix 13	AB4	B	135	139	Right-handed 310
Helix 14	AB5	B	146	150	Right-handed 310
Helix 15	AB6	B	216	220	Right-handed 310
Helix 16	AB7	B	251	258	Right-handed alpha
Helix 17	AB8	B	269	273	Right-handed 310
Helix 18	AB9	B	311	319	Right-handed 310
Helix 19	AC1	B	338	346	Right-handed alpha
Helix 20	AC2	B	423	435	Right-handed alpha
Helix 21	AC3	B	683	693	Right-handed alpha
Helix 22	AC4	B	841	848	Right-handed alpha

There are 26 sheets in PDB entry 7TYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	24	34	parallel
Strand 3	A	52	53	parallel
Strand 4	A	77	78	parallel
Strand 5	A	107	108	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	24	34	parallel
Strand 3	A	57	62	parallel
Strand 4	A	87	92	parallel
Strand 5	A	112	116	parallel
Strand 6	A	140	141	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	175	176	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	247	250	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	351	352	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	309	first strand
Strand 2	A	323	330	parallel
Strand 3	A	356	359	parallel
Strand 4	A	388	391	parallel
Strand 5	A	414	416	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	468	first strand
Strand 2	A	472	477	anti-parallel
Strand 3	A	534	537	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	522	first strand
Strand 2	A	491	497	anti-parallel
Strand 3	A	544	550	anti-parallel
Strand 4	A	570	573	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	588	first strand
Strand 2	A	595	600	anti-parallel
Strand 3	A	746	748	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	741	first strand
Strand 2	A	611	619	anti-parallel
Strand 3	A	756	764	anti-parallel
Strand 4	A	777	782	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	801	first strand
Strand 2	A	805	809	anti-parallel
Strand 3	A	849	853	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	840	first strand
Strand 2	A	820	829	anti-parallel
Strand 3	A	858	868	anti-parallel
Strand 4	A	879	883	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	24	34	parallel
Strand 3	B	52	53	parallel
Strand 4	B	77	78	parallel
Strand 5	B	107	108	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	24	34	parallel
Strand 3	B	57	62	parallel
Strand 4	B	87	92	parallel
Strand 5	B	112	116	parallel
Strand 6	B	140	141	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	247	250	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	309	first strand
Strand 2	B	323	330	parallel
Strand 3	B	351	352	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	309	first strand
Strand 2	B	323	330	parallel
Strand 3	B	356	359	parallel
Strand 4	B	388	391	parallel
Strand 5	B	414	416	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	468	first strand
Strand 2	B	472	477	anti-parallel
Strand 3	B	534	537	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	491	497	anti-parallel
Strand 3	B	544	550	anti-parallel
Strand 4	B	570	573	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	588	first strand
Strand 2	B	595	600	anti-parallel
Strand 3	B	746	748	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	741	first strand
Strand 2	B	611	619	anti-parallel
Strand 3	B	756	764	anti-parallel
Strand 4	B	777	782	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	801	first strand
Strand 2	B	805	809	anti-parallel
Strand 3	B	849	853	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	840	first strand
Strand 2	B	820	829	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	879	883	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYM