Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYV entry

There are 12 chains in PDB entry 7TYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 60	SER 246
B	SER 60	SER 246
C	SER 60	SER 246
D	GLN 3	LYS 222
E	ILE 1	GLY 209
G	GLN 3	LYS 222
L	ILE 1	GLY 209
H	GLN 3	LYS 222
K	ILE 1	GLY 209
a	GLY 260	LYS 417
b	GLY 260	LYS 417
c	GLY 260	LYS 417

There are 52 helices in PDB entry 7TYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	79	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	130	144	Right-handed alpha
Helix 4	AA4	A	157	161	Right-handed 310
Helix 5	AA5	A	184	195	Right-handed alpha
Helix 6	AA6	A	238	246	Right-handed alpha
Helix 7	AA7	B	75	79	Right-handed 310
Helix 8	AA8	B	120	127	Right-handed alpha
Helix 9	AA9	B	130	144	Right-handed alpha
Helix 10	AB1	B	157	161	Right-handed 310
Helix 11	AB2	B	184	195	Right-handed alpha
Helix 12	AB3	B	238	246	Right-handed alpha
Helix 13	AB4	C	75	79	Right-handed 310
Helix 14	AB5	C	120	127	Right-handed alpha
Helix 15	AB6	C	130	142	Right-handed alpha
Helix 16	AB7	C	157	161	Right-handed 310
Helix 17	AB8	C	184	195	Right-handed alpha
Helix 18	AB9	C	238	246	Right-handed alpha
Helix 19	AC1	D	28	32	Right-handed 310
Helix 20	AC2	D	87	91	Right-handed 310
Helix 21	AC3	D	194	199	Right-handed 310
Helix 22	AC4	E	118	125	Right-handed alpha
Helix 23	AC5	E	180	184	Right-handed alpha
Helix 24	AC6	G	28	32	Right-handed 310
Helix 25	AC7	G	87	91	Right-handed 310
Helix 26	AC8	G	164	166	Right-handed 310
Helix 27	AC9	G	194	199	Right-handed 310
Helix 28	AD1	L	118	124	Right-handed alpha
Helix 29	AD2	L	180	185	Right-handed alpha
Helix 30	AD3	H	87	91	Right-handed 310
Helix 31	AD4	H	194	199	Right-handed 310
Helix 32	AD5	K	118	123	Right-handed alpha
Helix 33	AD6	K	180	185	Right-handed alpha
Helix 34	AD7	a	294	300	Right-handed alpha
Helix 35	AD8	a	301	303	Right-handed 310
Helix 36	AD9	a	307	324	Right-handed alpha
Helix 37	AE1	a	335	341	Right-handed alpha
Helix 38	AE2	a	346	359	Right-handed alpha
Helix 39	AE3	a	399	417	Right-handed alpha
Helix 40	AE4	b	294	300	Right-handed alpha
Helix 41	AE5	b	307	325	Right-handed alpha
Helix 42	AE6	b	335	341	Right-handed alpha
Helix 43	AE7	b	346	359	Right-handed alpha
Helix 44	AE8	b	399	417	Right-handed alpha
Helix 45	AE9	c	294	299	Right-handed alpha
Helix 46	AF1	c	300	303	Right-handed 310
Helix 47	AF2	c	307	326	Right-handed alpha
Helix 48	AF3	c	335	341	Right-handed alpha
Helix 49	AF4	c	342	344	Right-handed 310
Helix 50	AF5	c	346	359	Right-handed alpha
Helix 51	AF6	c	395	398	Right-handed 310
Helix 52	AF7	c	399	417	Right-handed alpha

There are 44 sheets in PDB entry 7TYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	163	166	anti-parallel
Strand 6	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	223	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	154	156	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	372	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	225	anti-parallel
Strand 5	C	163	166	anti-parallel
Strand 6	C	154	156	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	106	110	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	148	153	anti-parallel
Strand 3	D	184	189	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	148	153	anti-parallel
Strand 3	D	184	189	anti-parallel
Strand 4	D	177	178	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	202	208	anti-parallel
Strand 3	D	213	219	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	61	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	99	102	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	48	anti-parallel
Strand 6	E	52	53	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	99	102	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	94	95	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	115	first strand
Strand 2	E	126	136	anti-parallel
Strand 3	E	170	179	anti-parallel
Strand 4	E	156	160	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	147	first strand
Strand 2	E	188	195	anti-parallel
Strand 3	E	202	207	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	115	119	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	106	110	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	148	153	anti-parallel
Strand 3	G	184	189	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	148	153	anti-parallel
Strand 3	G	184	189	anti-parallel
Strand 4	G	177	178	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	162	first strand
Strand 2	G	203	208	anti-parallel
Strand 3	G	213	218	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	99	102	parallel
Strand 3	L	84	88	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	111	112	first strand
Strand 2	L	133	136	anti-parallel
Strand 3	L	170	179	anti-parallel
Strand 4	L	126	130	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	111	112	first strand
Strand 2	L	133	136	anti-parallel
Strand 3	L	170	179	anti-parallel
Strand 4	L	157	160	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	141	147	first strand
Strand 2	L	188	195	anti-parallel
Strand 3	L	202	207	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	106	111	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	148	153	anti-parallel
Strand 3	H	184	189	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	148	153	anti-parallel
Strand 3	H	184	189	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	203	208	anti-parallel
Strand 3	H	213	218	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	69	74	anti-parallel
Strand 4	K	61	66	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	11	first strand
Strand 2	K	99	102	parallel
Strand 3	K	84	88	anti-parallel
Strand 4	K	33	37	anti-parallel
Strand 5	K	44	48	anti-parallel
Strand 6	K	52	53	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	111	112	first strand
Strand 2	K	133	136	anti-parallel
Strand 3	K	170	179	anti-parallel
Strand 4	K	126	130	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	111	112	first strand
Strand 2	K	133	136	anti-parallel
Strand 3	K	170	179	anti-parallel
Strand 4	K	157	160	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	147	first strand
Strand 2	K	188	195	anti-parallel
Strand 3	K	202	207	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	279	280	first strand
Strand 2	a	291	292	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	279	280	first strand
Strand 2	b	291	292	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	279	280	first strand
Strand 2	c	291	292	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYV