Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7TYW entry

There are 7 chains in PDB entry 7TYW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	CYS 27	THR 144
P	CYS 1	PRO 32
R	PRO 38	ALA 407
A	ASP 11	LEU 394
B	SER 2	TRP 339
G	SER 8	PHE 61
N	GLN 1	SER 127

There are 39 helices in PDB entry 7TYW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	29	35	Right-handed alpha
Helix 2	AA2	E	36	38	Right-handed 310
Helix 3	AA3	E	40	52	Right-handed alpha
Helix 4	AA4	E	63	68	Right-handed alpha
Helix 5	AA5	E	69	80	Right-handed alpha
Helix 6	AA6	E	86	98	Right-handed alpha
Helix 7	AA7	E	123	143	Right-handed alpha
Helix 8	AA8	P	4	6	Right-handed 310
Helix 9	AA9	P	7	22	Right-handed alpha
Helix 10	AB1	R	39	62	Right-handed alpha
Helix 11	AB2	R	137	173	Right-handed alpha
Helix 12	AB3	R	174	177	Right-handed 310
Helix 13	AB4	R	178	205	Right-handed alpha
Helix 14	AB5	R	208	215	Right-handed alpha
Helix 15	AB6	R	217	249	Right-handed alpha
Helix 16	AB7	R	259	267	Right-handed alpha
Helix 17	AB8	R	270	284	Right-handed alpha
Helix 18	AB9	R	295	297	Right-handed 310
Helix 19	AC1	R	298	328	Right-handed alpha
Helix 20	AC2	R	333	347	Right-handed alpha
Helix 21	AC3	R	348	353	Right-handed alpha
Helix 22	AC4	R	354	359	Right-handed alpha
Helix 23	AC5	R	365	382	Right-handed alpha
Helix 24	AC6	R	382	392	Right-handed alpha
Helix 25	AC7	R	395	404	Right-handed alpha
Helix 26	AC8	A	12	40	Right-handed alpha
Helix 27	AC9	A	233	239	Right-handed 310
Helix 28	AD1	A	265	278	Right-handed alpha
Helix 29	AD2	A	293	303	Right-handed alpha
Helix 30	AD3	A	307	312	Right-handed alpha
Helix 31	AD4	A	313	316	Right-handed 310
Helix 32	AD5	A	331	353	Right-handed alpha
Helix 33	AD6	A	370	391	Right-handed alpha
Helix 34	AD7	B	3	26	Right-handed alpha
Helix 35	AD8	B	29	34	Right-handed alpha
Helix 36	AD9	G	9	22	Right-handed alpha
Helix 37	AE1	G	29	43	Right-handed alpha
Helix 38	AE2	N	28	32	Right-handed 310
Helix 39	AE3	N	87	91	Right-handed 310

There are 11 sheets in PDB entry 7TYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	92	94	first strand
Strand 2	R	107	109	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	45	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	336	338	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	22	25	anti-parallel
Strand 3	N	78	80	anti-parallel
Strand 4	N	71	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7TYW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7TYW