Analysis of interatomic Contacts of Structural Units in PDB entry:
7U0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U0U entry

There are 2 chains in PDB entry 7U0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -50PHE 193
B
 MET 1ALA 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7U0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-46 -42Right-handed 310
Helix 2
AA2
A
-41 -19Right-handed alpha
Helix 3
AA3
A
31 35Right-handed 310
Helix 4
AA4
A
38 53Right-handed alpha
Helix 5
AA5
A
61 67Right-handed alpha
Helix 6
AA6
A
68 73Right-handed alpha
Helix 7
AA7
A
76 85Right-handed alpha
Helix 8
AA8
A
93 103Right-handed alpha
Helix 9
AA9
A
109 122Right-handed alpha
Helix 10
AB1
A
130 143Right-handed alpha
Helix 11
AB2
A
144 146Right-handed 310
Helix 12
AB3
A
147 163Right-handed alpha
Helix 13
AB4
A
172 179Right-handed alpha
Helix 14
AB5
A
183 188Right-handed alpha
Helix 15
AB6
B
57 64Right-handed alpha
Helix 16
AB7
B
65 67Right-handed 310
Helix 17
AB8
B
79 82Right-handed 310
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There are 3 sheets in PDB entry 7U0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
170 171anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
98 107anti-parallel
Strand 4
B
22 31anti-parallel
Strand 5
B
47 50anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
98 107anti-parallel
Strand 4
B
110 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il