Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U1B entry

There is 1 chain in PDB entry 7U1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30MET 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7U1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed 310
Helix 2
AA2
A
42 59Right-handed alpha
Helix 3
AA3
A
102 117Right-handed alpha
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
130 135Right-handed 310
Helix 6
AA6
A
158 164Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
220 234Right-handed alpha
Helix 10
AB1
A
236 245Right-handed alpha
Helix 11
AB2
A
259 266Right-handed 310
Helix 12
AB3
A
285 289Right-handed 310
Helix 13
AB4
A
306 319Right-handed alpha
Helix 14
AB5
A
330 338Right-handed alpha
Helix 15
AB6
A
381 386Right-handed 310
Helix 16
AB7
A
408 410Right-handed 310
Helix 17
AB8
A
423 440Right-handed alpha
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There are 5 sheets in PDB entry 7U1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 82first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
412 417anti-parallel
Strand 4
A
403 407anti-parallel
Strand 5
A
393 397anti-parallel
Strand 6
A
377 379anti-parallel
Strand 7
A
370 372anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
304 305anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
207 208parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
280 281anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
326 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il