Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U1E entry

There are 5 chains in PDB entry 7U1E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	ALA 358
B	ARG 32	ALA 358
C	ARG 31	ALA 358
D	ARG 31	ALA 358
E	MET 1	VAL 1578

There are 82 helices in PDB entry 7U1E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	66	Right-handed alpha
Helix 2	AA2	A	67	98	Right-handed alpha
Helix 3	AA3	A	116	129	Right-handed alpha
Helix 4	AA4	A	142	178	Right-handed alpha
Helix 5	AA5	A	265	270	Right-handed 310
Helix 6	AA6	A	271	276	Right-handed 310
Helix 7	AA7	A	330	334	Right-handed 310
Helix 8	AA8	A	345	358	Right-handed alpha
Helix 9	AA9	B	55	65	Right-handed alpha
Helix 10	AB1	B	67	97	Right-handed alpha
Helix 11	AB2	B	116	128	Right-handed alpha
Helix 12	AB3	B	142	174	Right-handed alpha
Helix 13	AB4	B	265	270	Right-handed 310
Helix 14	AB5	B	271	275	Right-handed 310
Helix 15	AB6	B	305	307	Right-handed 310
Helix 16	AB7	B	345	358	Right-handed alpha
Helix 17	AB8	C	55	64	Right-handed alpha
Helix 18	AB9	C	67	96	Right-handed alpha
Helix 19	AC1	C	116	129	Right-handed alpha
Helix 20	AC2	C	142	174	Right-handed alpha
Helix 21	AC3	C	265	270	Right-handed 310
Helix 22	AC4	C	271	275	Right-handed 310
Helix 23	AC5	C	345	358	Right-handed alpha
Helix 24	AC6	D	55	65	Right-handed alpha
Helix 25	AC7	D	67	97	Right-handed alpha
Helix 26	AC8	D	116	129	Right-handed alpha
Helix 27	AC9	D	144	175	Right-handed alpha
Helix 28	AD1	D	330	333	Right-handed 310
Helix 29	AD2	D	345	358	Right-handed alpha
Helix 30	AD3	E	8	13	Right-handed alpha
Helix 31	AD4	E	14	16	Right-handed 310
Helix 32	AD5	E	24	51	Right-handed alpha
Helix 33	AD6	E	70	99	Right-handed alpha
Helix 34	AD7	E	103	106	Right-handed 310
Helix 35	AD8	E	107	129	Right-handed alpha
Helix 36	AD9	E	136	161	Right-handed alpha
Helix 37	AE1	E	166	194	Right-handed alpha
Helix 38	AE2	E	207	212	Right-handed alpha
Helix 39	AE3	E	223	230	Right-handed alpha
Helix 40	AE4	E	232	243	Right-handed alpha
Helix 41	AE5	E	258	277	Right-handed alpha
Helix 42	AE6	E	283	329	Right-handed alpha
Helix 43	AE7	E	347	352	Right-handed alpha
Helix 44	AE8	E	354	402	Right-handed alpha
Helix 45	AE9	E	406	456	Right-handed alpha
Helix 46	AF1	E	457	469	Right-handed alpha
Helix 47	AF2	E	469	505	Right-handed alpha
Helix 48	AF3	E	505	512	Right-handed alpha
Helix 49	AF4	E	514	566	Right-handed alpha
Helix 50	AF5	E	572	615	Right-handed alpha
Helix 51	AF6	E	718	728	Right-handed alpha
Helix 52	AF7	E	783	790	Right-handed alpha
Helix 53	AF8	E	795	807	Right-handed alpha
Helix 54	AF9	E	807	815	Right-handed alpha
Helix 55	AG1	E	831	847	Right-handed alpha
Helix 56	AG2	E	855	861	Right-handed alpha
Helix 57	AG3	E	862	881	Right-handed alpha
Helix 58	AG4	E	893	898	Right-handed alpha
Helix 59	AG5	E	913	920	Right-handed alpha
Helix 60	AG6	E	922	928	Right-handed alpha
Helix 61	AG7	E	981	994	Right-handed alpha
Helix 62	AG8	E	996	1009	Right-handed alpha
Helix 63	AG9	E	1009	1044	Right-handed alpha
Helix 64	AH1	E	1061	1106	Right-handed alpha
Helix 65	AH2	E	1109	1116	Right-handed alpha
Helix 66	AH3	E	1117	1135	Right-handed alpha
Helix 67	AH4	E	1135	1161	Right-handed alpha
Helix 68	AH5	E	1163	1210	Right-handed alpha
Helix 69	AH6	E	1210	1218	Right-handed alpha
Helix 70	AH7	E	1219	1275	Right-handed alpha
Helix 71	AH8	E	1277	1321	Right-handed alpha
Helix 72	AH9	E	1386	1391	Right-handed alpha
Helix 73	AI1	E	1414	1421	Right-handed alpha
Helix 74	AI2	E	1436	1441	Right-handed alpha
Helix 75	AI3	E	1447	1459	Right-handed alpha
Helix 76	AI4	E	1460	1467	Right-handed alpha
Helix 77	AI5	E	1476	1479	Right-handed 310
Helix 78	AI6	E	1483	1499	Right-handed alpha
Helix 79	AI7	E	1512	1531	Right-handed alpha
Helix 80	AI8	E	1539	1544	Right-handed alpha
Helix 81	AI9	E	1564	1570	Right-handed alpha
Helix 82	AJ1	E	1573	1578	Right-handed 310

There are 28 sheets in PDB entry 7U1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	195	204	anti-parallel
Strand 3	A	255	259	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	195	204	anti-parallel
Strand 3	A	188	192	anti-parallel
Strand 4	A	310	311	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	211	221	anti-parallel
Strand 3	A	282	290	anti-parallel
Strand 4	A	297	300	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	336	338	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	327	328	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	C	327	329	parallel
Strand 3	C	319	320	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	255	260	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	309	310	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	210	221	anti-parallel
Strand 3	B	281	291	anti-parallel
Strand 4	B	297	304	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	336	337	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	188	192	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	255	260	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	290	291	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	238	first strand
Strand 2	C	213	223	anti-parallel
Strand 3	C	248	249	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	238	first strand
Strand 2	C	213	223	anti-parallel
Strand 3	C	281	287	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	315	first strand
Strand 2	C	336	337	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	200	203	anti-parallel
Strand 3	D	255	257	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	196	197	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	290	291	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	238	first strand
Strand 2	D	215	225	anti-parallel
Strand 3	D	282	287	anti-parallel
Strand 4	D	300	305	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	314	first strand
Strand 2	D	337	338	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	326	328	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	702	703	first strand
Strand 2	E	679	680	anti-parallel
Strand 3	E	738	739	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	696	697	first strand
Strand 2	E	685	686	anti-parallel
Strand 3	E	732	734	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	711	first strand
Strand 2	E	883	887	parallel
Strand 3	E	850	854	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1347	1348	first strand
Strand 2	E	1402	1405	anti-parallel
Strand 3	E	1408	1409	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1534	1536	first strand
Strand 2	E	1375	1377	parallel
Strand 3	E	1548	1553	parallel
Strand 4	E	1556	1561	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1434	1435	first strand
Strand 2	E	1474	1475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U1E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1E