Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U1P entry

There are 11 chains in PDB entry 7U1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 149	THR 778
B	THR 4	LYS 322
C	ARG 8	THR 335
D	SER 14	LEU 353
E	TRP 4	LEU 353
F	MET 1	ASN 255
G	MET 1	GLU 257
H	MET 1	LYS 253
I	A 8	T 25
J	G 10	T 43
K	C 1	T 10

There are124 helices in PDB entry 7U1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	173	183	Right-handed alpha
Helix 2	AA2	A	206	217	Right-handed alpha
Helix 3	AA3	A	222	233	Right-handed alpha
Helix 4	AA4	A	240	277	Right-handed alpha
Helix 5	AA5	A	292	296	Right-handed 310
Helix 6	AA6	A	297	302	Right-handed alpha
Helix 7	AA7	A	306	310	Right-handed 310
Helix 8	AA8	A	313	326	Right-handed alpha
Helix 9	AA9	A	326	333	Right-handed alpha
Helix 10	AB1	A	358	371	Right-handed alpha
Helix 11	AB2	A	384	397	Right-handed alpha
Helix 12	AB3	A	400	406	Right-handed alpha
Helix 13	AB4	A	413	417	Right-handed 310
Helix 14	AB5	A	425	429	Right-handed 310
Helix 15	AB6	A	435	446	Right-handed alpha
Helix 16	AB7	A	460	467	Right-handed 310
Helix 17	AB8	A	479	494	Right-handed alpha
Helix 18	AB9	A	502	511	Right-handed alpha
Helix 19	AC1	A	513	525	Right-handed alpha
Helix 20	AC2	A	535	544	Right-handed alpha
Helix 21	AC3	A	550	559	Right-handed alpha
Helix 22	AC4	A	565	572	Right-handed alpha
Helix 23	AC5	A	573	584	Right-handed alpha
Helix 24	AC6	A	587	596	Right-handed alpha
Helix 25	AC7	A	609	632	Right-handed alpha
Helix 26	AC8	A	637	639	Right-handed 310
Helix 27	AC9	A	640	656	Right-handed alpha
Helix 28	AD1	A	668	690	Right-handed alpha
Helix 29	AD2	A	697	720	Right-handed alpha
Helix 30	AD3	A	721	723	Right-handed 310
Helix 31	AD4	A	724	735	Right-handed alpha
Helix 32	AD5	A	738	747	Right-handed alpha
Helix 33	AD6	A	750	754	Right-handed 310
Helix 34	AD7	A	755	762	Right-handed alpha
Helix 35	AD8	A	763	778	Right-handed alpha
Helix 36	AD9	B	10	15	Right-handed alpha
Helix 37	AE1	B	19	23	Right-handed 310
Helix 38	AE2	B	26	40	Right-handed alpha
Helix 39	AE3	B	55	68	Right-handed alpha
Helix 40	AE4	B	70	74	Right-handed alpha
Helix 41	AE5	B	85	91	Right-handed alpha
Helix 42	AE6	B	91	99	Right-handed alpha
Helix 43	AE7	B	115	119	Right-handed 310
Helix 44	AE8	B	120	134	Right-handed alpha
Helix 45	AE9	B	146	150	Right-handed 310
Helix 46	AF1	B	151	157	Right-handed alpha
Helix 47	AF2	B	167	183	Right-handed alpha
Helix 48	AF3	B	187	199	Right-handed alpha
Helix 49	AF4	B	201	216	Right-handed alpha
Helix 50	AF5	B	220	228	Right-handed alpha
Helix 51	AF6	B	231	241	Right-handed alpha
Helix 52	AF7	B	244	256	Right-handed alpha
Helix 53	AF8	B	262	277	Right-handed alpha
Helix 54	AF9	B	281	302	Right-handed alpha
Helix 55	AG1	B	305	321	Right-handed alpha
Helix 56	AG2	C	14	19	Right-handed alpha
Helix 57	AG3	C	23	27	Right-handed 310
Helix 58	AG4	C	30	44	Right-handed alpha
Helix 59	AG5	C	58	72	Right-handed alpha
Helix 60	AG6	C	89	95	Right-handed alpha
Helix 61	AG7	C	95	103	Right-handed alpha
Helix 62	AG8	C	118	122	Right-handed 310
Helix 63	AG9	C	123	137	Right-handed alpha
Helix 64	AH1	C	170	185	Right-handed alpha
Helix 65	AH2	C	190	202	Right-handed alpha
Helix 66	AH3	C	204	219	Right-handed alpha
Helix 67	AH4	C	228	237	Right-handed alpha
Helix 68	AH5	C	240	254	Right-handed alpha
Helix 69	AH6	C	255	271	Right-handed alpha
Helix 70	AH7	C	273	288	Right-handed alpha
Helix 71	AH8	C	292	312	Right-handed alpha
Helix 72	AH9	C	315	333	Right-handed alpha
Helix 73	AI1	D	15	24	Right-handed alpha
Helix 74	AI2	D	26	31	Right-handed alpha
Helix 75	AI3	D	35	39	Right-handed 310
Helix 76	AI4	D	42	55	Right-handed alpha
Helix 77	AI5	D	70	84	Right-handed alpha
Helix 78	AI6	D	84	91	Right-handed alpha
Helix 79	AI7	D	102	108	Right-handed alpha
Helix 80	AI8	D	108	116	Right-handed alpha
Helix 81	AI9	D	122	129	Right-handed alpha
Helix 82	AJ1	D	142	145	Right-handed 310
Helix 83	AJ2	D	146	160	Right-handed alpha
Helix 84	AJ3	D	177	184	Right-handed alpha
Helix 85	AJ4	D	193	208	Right-handed alpha
Helix 86	AJ5	D	215	225	Right-handed alpha
Helix 87	AJ6	D	227	246	Right-handed alpha
Helix 88	AJ7	D	252	260	Right-handed alpha
Helix 89	AJ8	D	264	277	Right-handed alpha
Helix 90	AJ9	D	279	291	Right-handed alpha
Helix 91	AK1	D	296	311	Right-handed alpha
Helix 92	AK2	D	315	334	Right-handed alpha
Helix 93	AK3	D	338	353	Right-handed alpha
Helix 94	AK4	E	12	16	Right-handed 310
Helix 95	AK5	E	19	32	Right-handed alpha
Helix 96	AK6	E	48	61	Right-handed alpha
Helix 97	AK7	E	62	67	Right-handed 310
Helix 98	AK8	E	104	120	Right-handed alpha
Helix 99	AK9	E	147	161	Right-handed alpha
Helix 100	AL1	E	178	185	Right-handed alpha
Helix 101	AL2	E	194	210	Right-handed alpha
Helix 102	AL3	E	216	225	Right-handed alpha
Helix 103	AL4	E	229	244	Right-handed alpha
Helix 104	AL5	E	257	273	Right-handed alpha
Helix 105	AL6	E	275	291	Right-handed alpha
Helix 106	AL7	E	295	309	Right-handed alpha
Helix 107	AL8	E	314	334	Right-handed alpha
Helix 108	AL9	E	338	353	Right-handed alpha
Helix 109	AM1	F	8	20	Right-handed alpha
Helix 110	AM2	F	72	80	Right-handed alpha
Helix 111	AM3	F	141	152	Right-handed alpha
Helix 112	AM4	F	190	194	Right-handed 310
Helix 113	AM5	F	209	216	Right-handed alpha
Helix 114	AM6	F	217	221	Right-handed 310
Helix 115	AM7	G	8	19	Right-handed alpha
Helix 116	AM8	G	72	82	Right-handed alpha
Helix 117	AM9	G	141	155	Right-handed alpha
Helix 118	AN1	G	209	217	Right-handed alpha
Helix 119	AN2	H	8	18	Right-handed alpha
Helix 120	AN3	H	54	57	Right-handed 310
Helix 121	AN4	H	72	80	Right-handed alpha
Helix 122	AN5	H	141	152	Right-handed alpha
Helix 123	AN6	H	209	216	Right-handed alpha
Helix 124	AN7	H	217	221	Right-handed 310

There are 16 sheets in PDB entry 7U1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	162	164	parallel
Strand 3	A	198	200	parallel
Strand 4	A	219	221	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	378	first strand
Strand 2	A	419	424	parallel
Strand 3	A	451	455	parallel
Strand 4	A	348	352	parallel
Strand 5	A	470	474	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	530	531	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	658	660	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	109	113	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	48	parallel
Strand 5	B	159	162	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	112	117	parallel
Strand 3	C	141	146	parallel
Strand 4	C	49	52	parallel
Strand 5	C	162	165	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	135	140	parallel
Strand 3	D	164	170	parallel
Strand 4	D	61	64	parallel
Strand 5	D	185	188	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	136	140	parallel
Strand 3	E	165	170	parallel
Strand 4	E	39	42	parallel
Strand 5	E	186	189	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	76	first strand
Strand 2	E	82	89	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	247	248	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	87	92	anti-parallel
Strand 3	F	99	105	anti-parallel
Strand 4	F	110	116	anti-parallel
Strand 5	H	176	182	anti-parallel
Strand 6	H	167	170	anti-parallel
Strand 7	H	157	162	anti-parallel
Strand 8	H	203	208	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	35	40	anti-parallel
Strand 4	F	46	51	anti-parallel
Strand 5	F	245	250	anti-parallel
Strand 6	F	235	240	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	G	111	117	anti-parallel
Strand 6	G	98	104	anti-parallel
Strand 7	G	87	92	anti-parallel
Strand 8	G	2	6	anti-parallel
Strand 9	G	57	59	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	52	anti-parallel
Strand 5	G	244	250	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	208	first strand
Strand 2	G	157	162	anti-parallel
Strand 3	G	167	172	anti-parallel
Strand 4	G	177	182	anti-parallel
Strand 5	H	110	117	anti-parallel
Strand 6	H	98	104	anti-parallel
Strand 7	H	87	92	anti-parallel
Strand 8	H	2	5	anti-parallel
Strand 9	H	59	62	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	35	40	anti-parallel
Strand 4	H	46	52	anti-parallel
Strand 5	H	244	250	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1P