Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U1Q entry

There are 5 chains in PDB entry 7U1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 361
B	GLU 30	ALA 362
C	GLU 30	LEU 361
D	GLU 30	THR 360
E	MET 1	VAL 1578

There are 90 helices in PDB entry 7U1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	58	66	Right-handed alpha
Helix 3	AA3	A	67	97	Right-handed alpha
Helix 4	AA4	A	116	129	Right-handed alpha
Helix 5	AA5	A	142	172	Right-handed alpha
Helix 6	AA6	A	174	179	Right-handed alpha
Helix 7	AA7	A	307	309	Right-handed 310
Helix 8	AA8	A	331	333	Right-handed 310
Helix 9	AA9	A	345	361	Right-handed alpha
Helix 10	AB1	B	53	58	Right-handed alpha
Helix 11	AB2	B	58	66	Right-handed alpha
Helix 12	AB3	B	67	98	Right-handed alpha
Helix 13	AB4	B	116	129	Right-handed alpha
Helix 14	AB5	B	142	172	Right-handed alpha
Helix 15	AB6	B	176	179	Right-handed 310
Helix 16	AB7	B	271	275	Right-handed 310
Helix 17	AB8	B	331	333	Right-handed 310
Helix 18	AB9	B	345	362	Right-handed alpha
Helix 19	AC1	C	53	58	Right-handed alpha
Helix 20	AC2	C	58	66	Right-handed alpha
Helix 21	AC3	C	67	98	Right-handed alpha
Helix 22	AC4	C	116	129	Right-handed alpha
Helix 23	AC5	C	142	172	Right-handed alpha
Helix 24	AC6	C	174	180	Right-handed alpha
Helix 25	AC7	C	265	270	Right-handed 310
Helix 26	AC8	C	271	275	Right-handed 310
Helix 27	AC9	C	331	333	Right-handed 310
Helix 28	AD1	C	345	361	Right-handed alpha
Helix 29	AD2	D	58	66	Right-handed alpha
Helix 30	AD3	D	67	98	Right-handed alpha
Helix 31	AD4	D	116	129	Right-handed alpha
Helix 32	AD5	D	142	172	Right-handed alpha
Helix 33	AD6	D	174	179	Right-handed alpha
Helix 34	AD7	D	265	270	Right-handed 310
Helix 35	AD8	D	271	275	Right-handed 310
Helix 36	AD9	D	331	333	Right-handed 310
Helix 37	AE1	D	345	360	Right-handed alpha
Helix 38	AE2	E	8	13	Right-handed alpha
Helix 39	AE3	E	20	24	Right-handed 310
Helix 40	AE4	E	26	55	Right-handed alpha
Helix 41	AE5	E	70	96	Right-handed alpha
Helix 42	AE6	E	103	106	Right-handed 310
Helix 43	AE7	E	107	130	Right-handed alpha
Helix 44	AE8	E	132	135	Right-handed 310
Helix 45	AE9	E	136	160	Right-handed alpha
Helix 46	AF1	E	166	194	Right-handed alpha
Helix 47	AF2	E	207	212	Right-handed alpha
Helix 48	AF3	E	223	227	Right-handed 310
Helix 49	AF4	E	232	243	Right-handed alpha
Helix 50	AF5	E	258	277	Right-handed alpha
Helix 51	AF6	E	283	314	Right-handed alpha
Helix 52	AF7	E	314	328	Right-handed alpha
Helix 53	AF8	E	347	352	Right-handed alpha
Helix 54	AF9	E	354	401	Right-handed alpha
Helix 55	AG1	E	405	410	Right-handed alpha
Helix 56	AG2	E	413	456	Right-handed alpha
Helix 57	AG3	E	457	505	Right-handed alpha
Helix 58	AG4	E	505	512	Right-handed alpha
Helix 59	AG5	E	514	564	Right-handed alpha
Helix 60	AG6	E	572	614	Right-handed alpha
Helix 61	AG7	E	719	728	Right-handed alpha
Helix 62	AG8	E	784	790	Right-handed alpha
Helix 63	AG9	E	795	806	Right-handed alpha
Helix 64	AH1	E	807	812	Right-handed alpha
Helix 65	AH2	E	817	820	Right-handed 310
Helix 66	AH3	E	831	846	Right-handed alpha
Helix 67	AH4	E	862	880	Right-handed alpha
Helix 68	AH5	E	913	921	Right-handed alpha
Helix 69	AH6	E	987	993	Right-handed alpha
Helix 70	AH7	E	996	1009	Right-handed alpha
Helix 71	AH8	E	1011	1042	Right-handed alpha
Helix 72	AH9	E	1064	1107	Right-handed alpha
Helix 73	AI1	E	1109	1116	Right-handed alpha
Helix 74	AI2	E	1119	1135	Right-handed alpha
Helix 75	AI3	E	1135	1161	Right-handed alpha
Helix 76	AI4	E	1163	1210	Right-handed alpha
Helix 77	AI5	E	1210	1217	Right-handed alpha
Helix 78	AI6	E	1219	1275	Right-handed alpha
Helix 79	AI7	E	1277	1319	Right-handed alpha
Helix 80	AI8	E	1384	1393	Right-handed alpha
Helix 81	AI9	E	1411	1413	Right-handed 310
Helix 82	AJ1	E	1414	1419	Right-handed alpha
Helix 83	AJ2	E	1435	1441	Right-handed alpha
Helix 84	AJ3	E	1450	1458	Right-handed alpha
Helix 85	AJ4	E	1460	1466	Right-handed alpha
Helix 86	AJ5	E	1485	1498	Right-handed alpha
Helix 87	AJ6	E	1512	1530	Right-handed alpha
Helix 88	AJ7	E	1539	1545	Right-handed alpha
Helix 89	AJ8	E	1564	1570	Right-handed alpha
Helix 90	AJ9	E	1570	1578	Right-handed alpha

There are 34 sheets in PDB entry 7U1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	40	42	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	B	327	329	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	255	256	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	195	198	anti-parallel
Strand 3	A	188	192	anti-parallel
Strand 4	A	310	311	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	297	300	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	303	305	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	230	231	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	336	338	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	D	44	47	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	40	42	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	C	326	329	parallel
Strand 3	C	319	321	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	202	204	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	195	198	anti-parallel
Strand 3	B	188	192	anti-parallel
Strand 4	B	310	311	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	211	221	anti-parallel
Strand 3	B	248	249	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	211	221	anti-parallel
Strand 3	B	282	290	anti-parallel
Strand 4	B	301	302	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	336	338	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	D	326	329	parallel
Strand 3	D	319	321	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	201	204	anti-parallel
Strand 3	C	255	256	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	196	199	anti-parallel
Strand 3	C	187	191	anti-parallel
Strand 4	C	309	311	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	290	291	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	224	first strand
Strand 2	C	230	236	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	336	338	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	40	42	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	201	203	anti-parallel
Strand 3	D	255	256	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	196	198	anti-parallel
Strand 3	D	188	191	anti-parallel
Strand 4	D	310	311	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	238	first strand
Strand 2	D	210	223	anti-parallel
Strand 3	D	283	291	anti-parallel
Strand 4	D	301	302	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	336	338	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	685	687	first strand
Strand 2	E	731	734	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	710	711	first strand
Strand 2	E	900	904	parallel
Strand 3	E	907	912	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	771	772	first strand
Strand 2	E	850	852	parallel
Strand 3	E	883	884	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	782	783	first strand
Strand 2	E	822	823	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1351	1352	first strand
Strand 2	E	1399	1400	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1404	1405	first strand
Strand 2	E	1408	1409	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1551	1553	first strand
Strand 2	E	1556	1559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U1Q