Analysis of interatomic Contacts of Structural Units in PDB entry:
7U2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U2P entry

There are 2 chains in PDB entry 7U2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 542
B
 ALA 2GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7U2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
40 62Right-handed alpha
Helix 4
AA4
A
67 89Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
136 156Right-handed alpha
Helix 7
AA7
A
166 193Right-handed alpha
Helix 8
AA8
A
200 213Right-handed alpha
Helix 9
AA9
A
216 233Right-handed alpha
Helix 10
AB1
A
247 259Right-handed alpha
Helix 11
AB2
A
263 279Right-handed alpha
Helix 12
AB3
A
307 324Right-handed alpha
Helix 13
AB4
A
331 336Right-handed alpha
Helix 14
AB5
A
338 352Right-handed alpha
Helix 15
AB6
A
354 358Right-handed 310
Helix 16
AB7
A
392 419Right-handed alpha
Helix 17
AB8
A
422 437Right-handed alpha
Helix 18
AB9
A
442 450Right-handed alpha
Helix 19
AC1
A
451 455Right-handed 310
Helix 20
AC2
A
463 468Right-handed alpha
Helix 21
AC3
A
469 482Right-handed alpha
Helix 22
AC4
A
493 498Right-handed alpha
Helix 23
AC5
A
499 501Right-handed 310
Helix 24
AC6
A
503 507Right-handed 310
Helix 25
AC7
A
522 540Right-handed alpha
Helix 26
AC8
B
17 28Right-handed alpha
Helix 27
AC9
B
63 67Right-handed 310
Helix 28
AD1
B
69 73Right-handed 310
Helix 29
AD2
B
88 95Right-handed alpha
Helix 30
AD3
B
98 107Right-handed alpha
Helix 31
AD4
B
118 122Right-handed 310
Helix 32
AD5
B
124 133Right-handed alpha
Helix 33
AD6
B
140 152Right-handed alpha
Helix 34
AD7
B
166 180Right-handed alpha
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There are 3 sheets in PDB entry 7U2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
366 367anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
125 130parallel
Strand 3
A
96 100parallel
Strand 4
A
281 284parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
372 377anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 48first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
4 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il