Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U5I entry

There are 8 chains in PDB entry 7U5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 42	PRO 411
B	GLU 42	PRO 411
C	GLU 42	PRO 411
D	GLU 42	PRO 411
E	GLU 42	PRO 411
F	GLU 42	PRO 411
G	GLU 42	PRO 411
H	GLU 42	PRO 411

There are104 helices in PDB entry 7U5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	53	Right-handed 310
Helix 2	AA2	A	61	67	Right-handed alpha
Helix 3	AA3	A	68	77	Right-handed alpha
Helix 4	AA4	A	85	96	Right-handed alpha
Helix 5	AA5	A	113	118	Right-handed alpha
Helix 6	AA6	A	118	130	Right-handed alpha
Helix 7	AA7	A	180	197	Right-handed alpha
Helix 8	AA8	A	213	223	Right-handed alpha
Helix 9	AA9	A	232	239	Right-handed alpha
Helix 10	AB1	A	278	301	Right-handed alpha
Helix 11	AB2	A	332	338	Right-handed alpha
Helix 12	AB3	A	340	348	Right-handed alpha
Helix 13	AB4	A	378	403	Right-handed alpha
Helix 14	AB5	B	48	53	Right-handed 310
Helix 15	AB6	B	61	67	Right-handed alpha
Helix 16	AB7	B	68	77	Right-handed alpha
Helix 17	AB8	B	85	96	Right-handed alpha
Helix 18	AB9	B	113	118	Right-handed alpha
Helix 19	AC1	B	118	130	Right-handed alpha
Helix 20	AC2	B	180	197	Right-handed alpha
Helix 21	AC3	B	213	223	Right-handed alpha
Helix 22	AC4	B	232	239	Right-handed alpha
Helix 23	AC5	B	278	301	Right-handed alpha
Helix 24	AC6	B	332	338	Right-handed alpha
Helix 25	AC7	B	340	348	Right-handed alpha
Helix 26	AC8	B	378	403	Right-handed alpha
Helix 27	AC9	C	48	53	Right-handed 310
Helix 28	AD1	C	61	67	Right-handed alpha
Helix 29	AD2	C	68	77	Right-handed alpha
Helix 30	AD3	C	85	96	Right-handed alpha
Helix 31	AD4	C	113	118	Right-handed alpha
Helix 32	AD5	C	118	130	Right-handed alpha
Helix 33	AD6	C	180	197	Right-handed alpha
Helix 34	AD7	C	213	223	Right-handed alpha
Helix 35	AD8	C	232	239	Right-handed alpha
Helix 36	AD9	C	278	301	Right-handed alpha
Helix 37	AE1	C	332	338	Right-handed alpha
Helix 38	AE2	C	340	348	Right-handed alpha
Helix 39	AE3	C	378	403	Right-handed alpha
Helix 40	AE4	D	48	53	Right-handed 310
Helix 41	AE5	D	61	67	Right-handed alpha
Helix 42	AE6	D	68	77	Right-handed alpha
Helix 43	AE7	D	85	96	Right-handed alpha
Helix 44	AE8	D	113	118	Right-handed alpha
Helix 45	AE9	D	118	130	Right-handed alpha
Helix 46	AF1	D	180	197	Right-handed alpha
Helix 47	AF2	D	213	223	Right-handed alpha
Helix 48	AF3	D	232	239	Right-handed alpha
Helix 49	AF4	D	278	301	Right-handed alpha
Helix 50	AF5	D	332	338	Right-handed alpha
Helix 51	AF6	D	340	348	Right-handed alpha
Helix 52	AF7	D	378	403	Right-handed alpha
Helix 53	AF8	E	48	53	Right-handed 310
Helix 54	AF9	E	61	67	Right-handed alpha
Helix 55	AG1	E	68	77	Right-handed alpha
Helix 56	AG2	E	85	96	Right-handed alpha
Helix 57	AG3	E	113	118	Right-handed alpha
Helix 58	AG4	E	118	130	Right-handed alpha
Helix 59	AG5	E	180	197	Right-handed alpha
Helix 60	AG6	E	213	223	Right-handed alpha
Helix 61	AG7	E	232	239	Right-handed alpha
Helix 62	AG8	E	278	301	Right-handed alpha
Helix 63	AG9	E	332	338	Right-handed alpha
Helix 64	AH1	E	340	348	Right-handed alpha
Helix 65	AH2	E	378	403	Right-handed alpha
Helix 66	AH3	F	48	53	Right-handed 310
Helix 67	AH4	F	61	67	Right-handed alpha
Helix 68	AH5	F	68	77	Right-handed alpha
Helix 69	AH6	F	85	96	Right-handed alpha
Helix 70	AH7	F	113	118	Right-handed alpha
Helix 71	AH8	F	118	130	Right-handed alpha
Helix 72	AH9	F	180	197	Right-handed alpha
Helix 73	AI1	F	213	223	Right-handed alpha
Helix 74	AI2	F	232	239	Right-handed alpha
Helix 75	AI3	F	278	301	Right-handed alpha
Helix 76	AI4	F	332	338	Right-handed alpha
Helix 77	AI5	F	340	348	Right-handed alpha
Helix 78	AI6	F	378	403	Right-handed alpha
Helix 79	AI7	G	48	53	Right-handed 310
Helix 80	AI8	G	61	67	Right-handed alpha
Helix 81	AI9	G	68	77	Right-handed alpha
Helix 82	AJ1	G	85	96	Right-handed alpha
Helix 83	AJ2	G	113	118	Right-handed alpha
Helix 84	AJ3	G	118	130	Right-handed alpha
Helix 85	AJ4	G	180	197	Right-handed alpha
Helix 86	AJ5	G	213	223	Right-handed alpha
Helix 87	AJ6	G	232	239	Right-handed alpha
Helix 88	AJ7	G	278	301	Right-handed alpha
Helix 89	AJ8	G	332	338	Right-handed alpha
Helix 90	AJ9	G	340	348	Right-handed alpha
Helix 91	AK1	G	378	403	Right-handed alpha
Helix 92	AK2	H	48	53	Right-handed 310
Helix 93	AK3	H	61	67	Right-handed alpha
Helix 94	AK4	H	68	77	Right-handed alpha
Helix 95	AK5	H	85	96	Right-handed alpha
Helix 96	AK6	H	113	118	Right-handed alpha
Helix 97	AK7	H	118	130	Right-handed alpha
Helix 98	AK8	H	180	197	Right-handed alpha
Helix 99	AK9	H	213	223	Right-handed alpha
Helix 100	AL1	H	232	239	Right-handed alpha
Helix 101	AL2	H	278	301	Right-handed alpha
Helix 102	AL3	H	332	338	Right-handed alpha
Helix 103	AL4	H	340	348	Right-handed alpha
Helix 104	AL5	H	378	403	Right-handed alpha

There are 8 sheets in PDB entry 7U5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	249	253	anti-parallel
Strand 3	A	258	262	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	159	168	anti-parallel
Strand 6	A	327	331	anti-parallel
Strand 7	A	366	371	anti-parallel
Strand 8	A	350	353	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	249	253	anti-parallel
Strand 3	B	258	262	anti-parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	159	168	anti-parallel
Strand 6	B	327	331	anti-parallel
Strand 7	B	366	371	anti-parallel
Strand 8	B	350	353	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	208	first strand
Strand 2	C	249	253	anti-parallel
Strand 3	C	258	262	anti-parallel
Strand 4	C	268	274	anti-parallel
Strand 5	C	159	168	anti-parallel
Strand 6	C	327	331	anti-parallel
Strand 7	C	366	371	anti-parallel
Strand 8	C	350	353	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	208	first strand
Strand 2	D	249	253	anti-parallel
Strand 3	D	258	262	anti-parallel
Strand 4	D	268	274	anti-parallel
Strand 5	D	159	168	anti-parallel
Strand 6	D	327	331	anti-parallel
Strand 7	D	366	371	anti-parallel
Strand 8	D	350	353	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	208	first strand
Strand 2	E	249	253	anti-parallel
Strand 3	E	258	262	anti-parallel
Strand 4	E	268	274	anti-parallel
Strand 5	E	159	168	anti-parallel
Strand 6	E	327	331	anti-parallel
Strand 7	E	366	371	anti-parallel
Strand 8	E	350	353	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	208	first strand
Strand 2	F	249	253	anti-parallel
Strand 3	F	258	262	anti-parallel
Strand 4	F	268	274	anti-parallel
Strand 5	F	159	168	anti-parallel
Strand 6	F	327	331	anti-parallel
Strand 7	F	366	371	anti-parallel
Strand 8	F	350	353	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	208	first strand
Strand 2	G	249	253	anti-parallel
Strand 3	G	258	262	anti-parallel
Strand 4	G	268	274	anti-parallel
Strand 5	G	159	168	anti-parallel
Strand 6	G	327	331	anti-parallel
Strand 7	G	366	371	anti-parallel
Strand 8	G	350	353	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	208	first strand
Strand 2	H	249	253	anti-parallel
Strand 3	H	258	262	anti-parallel
Strand 4	H	268	274	anti-parallel
Strand 5	H	159	168	anti-parallel
Strand 6	H	327	331	anti-parallel
Strand 7	H	366	371	anti-parallel
Strand 8	H	350	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5I