Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U5P entry

There are 8 chains in PDB entry 7U5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 27	MET 120
C	THR 27	MET 120
E	THR 27	MET 120
G	THR 27	MET 120
B	GLY 311	SER 426
D	GLY 311	SER 426
F	GLY 311	SER 426
H	GLY 311	SER 426

There are 17 helices in PDB entry 7U5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	41	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	109	113	Right-handed 310
Helix 4	AA4	C	82	86	Right-handed 310
Helix 5	AA5	C	109	113	Right-handed 310
Helix 6	AA6	E	36	41	Right-handed alpha
Helix 7	AA7	E	82	86	Right-handed 310
Helix 8	AA8	E	109	113	Right-handed 310
Helix 9	AA9	G	36	41	Right-handed alpha
Helix 10	AB1	G	82	86	Right-handed 310
Helix 11	AB2	G	109	113	Right-handed 310
Helix 12	AB3	B	367	378	Right-handed alpha
Helix 13	AB4	B	383	387	Right-handed 310
Helix 14	AB5	D	367	378	Right-handed alpha
Helix 15	AB6	D	383	387	Right-handed 310
Helix 16	AB7	F	367	378	Right-handed alpha
Helix 17	AB8	H	367	378	Right-handed alpha

There are 22 sheets in PDB entry 7U5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	49	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	70	79	anti-parallel
Strand 4	A	59	67	anti-parallel
Strand 5	A	101	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	115	116	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	49	first strand
Strand 2	C	29	34	anti-parallel
Strand 3	C	70	79	anti-parallel
Strand 4	C	59	67	anti-parallel
Strand 5	C	104	105	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	115	116	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	49	first strand
Strand 2	E	29	34	anti-parallel
Strand 3	E	70	80	anti-parallel
Strand 4	E	58	67	anti-parallel
Strand 5	E	104	105	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	115	116	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	49	first strand
Strand 2	G	29	34	anti-parallel
Strand 3	G	70	80	anti-parallel
Strand 4	G	58	67	anti-parallel
Strand 5	G	104	105	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	93	first strand
Strand 2	G	115	116	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	349	351	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	344	346	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	391	404	anti-parallel
Strand 3	B	410	425	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	349	351	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	344	346	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	391	404	anti-parallel
Strand 3	D	410	425	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	313	first strand
Strand 2	F	322	324	parallel
Strand 3	F	349	351	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	327	329	first strand
Strand 2	F	344	346	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	389	404	anti-parallel
Strand 3	F	353	354	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	389	404	anti-parallel
Strand 3	F	410	425	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	322	324	first strand
Strand 2	H	349	351	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	327	329	first strand
Strand 2	H	344	346	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	389	404	anti-parallel
Strand 3	H	353	354	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	389	404	anti-parallel
Strand 3	H	410	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5P